Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq154 141 9e-29 seq85 113 4e-20 seq43 89.7 5e-13 >seq154 Length=71981 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || |||| || ||| | || | ||||||||||| ||||| |||||||| | Sbjct 41472 CCACCTCGCAATCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGAC 41413 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || |||||||| || ||| ||||||| |||||||| || || || Sbjct 41412 AAGGTTCGACCATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGGA 41353 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || |||||||| ||||||| ||| | | |||| ||| || | || ||| Sbjct 41352 ATACCTTCCTTGTCTTGGATTTTCGACTTAACGTTATCGATGGTATCAGATGATTCCACT 41293 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| || | |||||||| || |||||||| |||||||| |||||| Sbjct 41292 TCGAGTGTTATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCATG 41245 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | || || ||||| ||||| ||||| |||| || |||||| || || Sbjct 40999 CACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCGTCTTC 40940 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || |||||| | |||| || ||||| || ||||| |||||||||||||| Sbjct 40939 AAGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTG 40880 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || || ||||| | |||| ||||| | ||||| || | ||| | || || Sbjct 40879 AATCTTGCTCTTGACATTGTCGATCGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTT 40820 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| |||||||| || || || |||||||| Sbjct 40819 GCCAGTCAGAGTCTTGACGAAGATCTGCAT 40790 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || || ||||||||||| | || || || || || || || || ||| Sbjct 41214 GTCGATTCCTTCTGGATATTGTAATCACTCAAAGTTCGGCCGTCTTCCAGTTGCTTACCA 41155 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||||||| |||||||| || |||||||| ||| |||||| |||| Sbjct 41154 GCAAAGATGAGTCGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATTTTGCTCTTG 41095 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||| || | | ||| || |||| || | || || || |||| || Sbjct 41094 ACATTGTCGATGGTATCGGAAGACTCAACCTCGAGAGTGATTGTCTTACCAGTCAATGTC 41035 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||||||||||||| Sbjct 41034 TTCACAAAAATCTGCATG 41017 Score = 96.9 bits (106), Expect = 3e-15 Identities = 167/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 126875 TACTATACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATA 126934 |||| ||||| || || || | ||| | ||||| || | ||| ||| || ||||| Sbjct 41710 TACT-TACTGG-CCGCCCCGAAGTCGGAGAACCAAGTGCAGTGTACTCTCCTTCTGAATG 41653 Query 126935 TTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGC 126994 |||||||| | || ||| || || | || ||||| || |||||| ||| ||| Sbjct 41652 TTGTAATCAGAAAGAGTACGACCGTCCTCCAATTGCTTTCCGGCAAAGATCAGTCGTTGC 41593 Query 126995 TGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCC 127054 ||||| || || || |||||||||||| ||| || ||| | | |||| ||||| Sbjct 41592 TGATCCGGCGGAATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATAGTGTCA 41533 Query 127055 GTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | ||||| || || | ||| | || |||||||| || || || || ||||| |||||| Sbjct 41532 GAGCTCTCAACCTCCAAGGTAATTGTCTTGCCGGTGAGTGTCTTCACGAAAATTTGCATG 41473 >seq85 Length=245923 Score = 113 bits (124), Expect = 4e-20 Identities = 303/457 (66%), Gaps = 25/457 (5%) Strand=Plus/Minus Query 47133 GCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCG 47192 ||| | ||| || |||| || ||| || || || |||||||||| ||| ||| || Sbjct 84599 GCCCAGCGTCTGGTCGCCTTTGCCGCTGTGGAAGGTATCTTCTTCTCCGGCTCCTTCGCC 84540 Query 47193 GCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTA 47252 | || || | | || | ||| | ||||||||||| || || |||||| || Sbjct 84539 TCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTTACCTTCTCCAACGAACTT 84480 Query 47253 ATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCT-CTACTA---CAAC---AC 47305 ||||| | ||||| ||| |||||||| ||||||| || || || || || | || Sbjct 84479 ATCTCCCGGGACGAGGGCATGCACACCGACTTTGCGTGCCTGCTGCTCTCGCACCTTAAC 84420 Query 47306 TAGAGTCGATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGC 47365 | | | ||||| | || | ||| | ||| | | ||| |||||| Sbjct 84419 CACCGCCCCTCAAAGGA---ACTTATCCAG-------GCCATCATCGTCGAGGCCGTCCA 84370 Query 47366 CATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGA 47425 || ||| || || || ||||||| || |||| || || |||| |||||| || | Sbjct 84369 GATCGAGCAAGAATTCCTCACCGAGGCGCTCCCCGTTGCTCTACTGGGCATGAACTCGAA 84310 Query 47426 GATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCC 47485 | | |||| ||||||| || || || |||||||| ||| | || || ||| || Sbjct 84309 GCTCATGAAGCAGTACATTGAGTTCGTTGCCGACCGGCTGTTGGTA-AGTATGGGTAACC 84251 Query 47486 C-AAGATTTACCA---CACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGG 47541 | ||| ||| | |||| ||||| || || |||||| | ||||| || || | || Sbjct 84250 CGAAGTACTACAAGGTCACC---AATCCGTTTGACTTTATGGAGAACATCTCTCTAGCGG 84194 Query 47542 GCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 |||||||||| || ||||||||||| || || || || Sbjct 84193 GCAAGACCAATTTCTTCGAGAAGCGAGTGGGTGACTA 84157 >seq43 Length=153456 Score = 89.7 bits (98), Expect = 5e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || || || || | ||| | |||| |||| || ||||| || || || ||||| ||| Sbjct 109530 GCACCGCCTCGAAGTCGTAGTACCAGGTGTAGAGTCGACTCCTTCTGGATGTTGTAGTCG 109471 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | | |||||| ||| || || || || || ||| ||||||||||||||||||| || Sbjct 109470 CTAAGGGTGCGACCATCCTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGCTGATCAGGT 109411 Query 127004 GGTATGCCCTCCTTGTC 127020 || || ||||||||||| Sbjct 109410 GGAATACCCTCCTTGTC 109394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499510204080