Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq154 132 4e-26
seq123 89.7 5e-13
>seq154
Length=71981
Score = 132 bits (146), Expect = 4e-26
Identities = 163/218 (75%), Gaps = 6/218 (3%)
Strand=Plus/Minus
Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGAC--GGTTTTAG 45183
|||| ||| || ||||| || || || || || || || ||||| |||| |||| |
Sbjct 41460 CTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATC--TGACAAGGTTCGAC 41403
Query 45184 AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTT 45243
||| |||| ||||| |||||| | ||||| || |||||||| || ||||| ||||| |
Sbjct 41402 CATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGGAATACCTTCCT 41343
Query 45244 TATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTA 45302
| ||||| ||||| || | || | || | ||| || || || || |||||||| ||
Sbjct 41342 TGTCTTGGATTTTCGACTTAA-CGTTATCGATGGTATCAGATGATTCCACTTCGAGTGTT 41284
Query 45303 ACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
| |||||||| || |||||||| ||||||||||||||
Sbjct 41283 ATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCAT 41246
Score = 107 bits (118), Expect = 2e-18
Identities = 154/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
||||| || || || |||||||| |||||||| ||||| || | ||| || |||
Sbjct 41226 ACTAGGTGAAGAGTCGATTCCTTCTGGATATTGTAATCACTCAAAGTTCGGCCGTCTTCC 41167
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| ||| || || || | || | ||| |||||||| || ||||| || || ||||| ||
Sbjct 41166 AGTTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGG 41107
Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311
||||| |||| || | ||| ||||||||||| || |||||||| | || ||
Sbjct 41106 ATTTTGCTCTTGACATTGTCGATGGTATCGGAAGACTCAACCTCGAGAGTGATTGTCTTA 41047
Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348
|| || | || || |||||||| ||||| ||| ||
Sbjct 41046 CCAGTCAATGTCTTCACAAAAATCTGCATGCCGCCAC 41010
Score = 82.4 bits (90), Expect = 7e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | | ||| | || || |||||||| || || || || || |||
Sbjct 41019 ATGCCGCCACGGAGACGGAGCACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCG 40960
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| | ||| | || || | || || || ||| | |||| ||||||||||| ||
Sbjct 40959 CTCAAGGTGCGACCGTCTTCAAGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGA 40900
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|||||||| || || |||||||| || |||| || | ||||| || |||
Sbjct 40899 GGAATGCCCTCCTTGTCTTGAATCTTGCTCTTGACATTGTCGATCGTGTCACTGGATTCG 40840
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || || | || ||||| || ||||| || || || || |||||
Sbjct 40839 ACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 40790
>seq123
Length=109856
Score = 89.7 bits (98), Expect = 5e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665
|| || |||| || | |||||||||||| |||||||||||||| |||| |||||||
Sbjct 48145 GAGACTGGAAACCCATTCATGCTCTACAAGGACGCCTGCAACAGAAAAAGTAATCAGAAG 48204
Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCC 123725
|||||||| || || || | || | ||| | ||||| || || |||| || |
Sbjct 48205 AACTTGGGCACCATCAAGTCCTCCAACTTGTGCACAGAAATCATTGAGTACACCGCCCCT 48264
Query 123726 GATCAAGTGGCCGTGTGTAATTTGGCTTC 123754
|| | || ||||| || |||||||||||
Sbjct 48265 GACGAGGTCGCCGTCTGCAATTTGGCTTC 48293
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452001973941320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |