Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq154 132 4e-26 seq123 89.7 5e-13 >seq154 Length=71981 Score = 132 bits (146), Expect = 4e-26 Identities = 163/218 (75%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGAC--GGTTTTAG 45183 |||| ||| || ||||| || || || || || || || ||||| |||| |||| | Sbjct 41460 CTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATC--TGACAAGGTTCGAC 41403 Query 45184 AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTT 45243 ||| |||| ||||| |||||| | ||||| || |||||||| || ||||| ||||| | Sbjct 41402 CATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGGAATACCTTCCT 41343 Query 45244 TATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTA 45302 | ||||| ||||| || | || | || | ||| || || || || |||||||| || Sbjct 41342 TGTCTTGGATTTTCGACTTAA-CGTTATCGATGGTATCAGATGATTCCACTTCGAGTGTT 41284 Query 45303 ACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | |||||||| || |||||||| |||||||||||||| Sbjct 41283 ATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCAT 41246 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 ||||| || || || |||||||| |||||||| ||||| || | ||| || ||| Sbjct 41226 ACTAGGTGAAGAGTCGATTCCTTCTGGATATTGTAATCACTCAAAGTTCGGCCGTCTTCC 41167 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||| || || || | || | ||| |||||||| || ||||| || || ||||| || Sbjct 41166 AGTTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGG 41107 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| |||| || | ||| ||||||||||| || |||||||| | || || Sbjct 41106 ATTTTGCTCTTGACATTGTCGATGGTATCGGAAGACTCAACCTCGAGAGTGATTGTCTTA 41047 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 || || | || || |||||||| ||||| ||| || Sbjct 41046 CCAGTCAATGTCTTCACAAAAATCTGCATGCCGCCAC 41010 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| | || || |||||||| || || || || || ||| Sbjct 41019 ATGCCGCCACGGAGACGGAGCACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCG 40960 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | ||| | || || | || || || ||| | |||| ||||||||||| || Sbjct 40959 CTCAAGGTGCGACCGTCTTCAAGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGA 40900 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || || |||||||| || |||| || | ||||| || ||| Sbjct 40899 GGAATGCCCTCCTTGTCTTGAATCTTGCTCTTGACATTGTCGATCGTGTCACTGGATTCG 40840 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || ||||| || ||||| || || || || ||||| Sbjct 40839 ACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 40790 >seq123 Length=109856 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 || || |||| || | |||||||||||| |||||||||||||| |||| ||||||| Sbjct 48145 GAGACTGGAAACCCATTCATGCTCTACAAGGACGCCTGCAACAGAAAAAGTAATCAGAAG 48204 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCC 123725 |||||||| || || || | || | ||| | ||||| || || |||| || | Sbjct 48205 AACTTGGGCACCATCAAGTCCTCCAACTTGTGCACAGAAATCATTGAGTACACCGCCCCT 48264 Query 123726 GATCAAGTGGCCGTGTGTAATTTGGCTTC 123754 || | || ||||| || ||||||||||| Sbjct 48265 GACGAGGTCGCCGTCTGCAATTTGGCTTC 48293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001973941320