Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq123 233 2e-56 seq85 125 9e-24 >seq123 Length=109856 Score = 233 bits (258), Expect = 2e-56 Identities = 554/823 (67%), Gaps = 17/823 (2%) Strand=Plus/Minus Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532 |||||||| || ||||| || ||||| || || ||| ||||||||||||||||| ||| Sbjct 48257 GTGTACTCAATGATTTCTGTGCACAAGTTGGAGGACTTGATGGTGCCCAAGTTCTTCTGA 48198 Query 116533 TTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592 || ||| |||| || || |||||||||||||| |||| | || ||||| || ||| Sbjct 48197 TTACTTTTTCTGTTGCAGGCGTCCTTGTAGAGCATGAATGGGTTTCCAGTCTCAGTCTGG 48138 Query 116593 GACTTGAGAATAGCCTTCCA-TACATCGGCGGCTGGCACAGTGGC-GTTGG-CTCGCCCC 116649 | || | || || | ||| || || | | || | | || | || || |||| || Sbjct 48137 GCCTCCAAGATGGCATACCACAACTTCTGTGCCTTG---ATTGTCTGTCGGCCTCGGCCT 48081 Query 116650 TCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCC 116708 |||| ||| ||||| | | || ||||| ||||| ||| || ||| || || | || Sbjct 48080 TCCTTCTCATACTTCTCGAACAGAGCCTCGAACTCCTCA-CCGTAGCAGTCAGATAAACC 48022 Query 116709 TGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 116768 ||| || | | || |||||||||| ||| | || | |||||||||||||||||| Sbjct 48021 TGGAGCTTCGTTGGGGCAGAAGAGAGTCCAGTCTCCGTTTTTCTCAACCCGCTTCATGAA 47962 Query 116769 GAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTG 116828 || ||||| ||||||| || | || | ||| ||| ||| ||||||| | || || Sbjct 47961 CAGATCTGGAGTCCAGAGAGCGTAAAACAAATCACGAGCACGAACTTCTTCCTTTCCGTG 47902 Query 116829 ATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 116888 || || | | || | || | || ||| |||||||| || || ||||| || || Sbjct 47901 GTTCTTCCGGAGGTTCAGCCACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAACGGC 47842 Query 116889 GATTG-ACC---CCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATA 116944 | | ||| || | | || |||||| || || | || || || ||| | Sbjct 47841 AAAGGCACCAGGTCTCTTGTTG-CCGCCCTGGTCGACGTATCGAGCAGTATTGTCAAAGA 47783 Query 116945 CGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTT 117002 | || ||||| || | | || | ||| ||| ||||| || ||| ||| ||| | Sbjct 47782 CTCGGAGCATAGGGACAAGGCCGTTTGATGTGCCGTTTGTGCCTGCGATATAGGAGCC-- 47725 Query 117003 GTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGC 117062 | |||| | | ||||| || || |||||||| || || ||||||||| || Sbjct 47724 AGTCGCTCGAATTTTGTGGACGTTCAATCCAATACCGCCGGCATTCTTTGAGATCATGGC 47665 Query 117063 GCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAA 117122 ||| | | || | ||||||| || ||||||||||| |||| | |||| | ||| Sbjct 47664 GCAGGTCTTTAGCGTATCGTAGATTCCCTCGATCGAGTCCTCCTTCATGTCGATCAAGAA 47605 Query 117123 GCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGAT 117182 || |||||||| | ||||||| || || ||||||||||| || | ||||| | Sbjct 47604 ACATGATGACATTTGAGCATTTGGTGTGCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGT 47545 Query 117183 GAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTG 117242 |||||| |||||||| || ||| ||||| | ||| || ||||| || || Sbjct 47544 GAACATCTTCTGGGACATGAGATTGTATGTCTCAATGACCTTCTCGATATCTTCTCCATG 47485 Query 117243 AATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCC 117285 ||| || | || || ||||| | ||||| || ||| ||||| Sbjct 47484 AATGCCAACAGACACGCGCATCAGCATGTGCTGTGGTCTTTCC 47442 >seq85 Length=245923 Score = 125 bits (138), Expect = 9e-24 Identities = 219/312 (70%), Gaps = 10/312 (3%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | |||||||| |||||||| ||||| || |||||| || || Sbjct 84445 GCAAAGTCGGTGTGCATGCCCTCGTCCCGGGAGATAAGTTCGTTGGAGAAGGTAAGGCCG 84504 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | |||||| || | || ||||| ||||||||||| Sbjct 84505 GGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATA 84564 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATC---A 127696 || |||||| || || || | ||||||| |||||||| ||||| | ||| | Sbjct 84565 CCTTCCACAGCGGCAAAGGCGACCAGACGCTGGGCAAAGG---TGGACTCTCGATCTGAA 84621 Query 127697 AACCACTTCATCGCCCACTGTGCCTT-TTTCTCGATACATGGGACGGTCTGGATCGCTTC 127755 | ||| | ||||| | || || ||||| || || || | || | ||| || || Sbjct 84622 ATCCAGCGGAGAGCCCATTCAGCTTTCTTTCT-AATGCAAGGAATTGTATCGATGGCGTC 84680 Query 127756 AAAGAGTTCCT-TCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATG 127814 ||||| | | ||||| || ||| ||||| ||||| | || ||||| ||| || Sbjct 84681 GAAGAGGTATTGTCTTTGCT-TTGGCTCTTTAATGTATGTGTCAATGAGAAGTGAGTACA 84739 Query 127815 TTTCGCCGTGGA 127826 |||||| ||||| Sbjct 84740 TTTCGCTGTGGA 84751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613505535861720