Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq123 111 3e-19 seq85 111 3e-19 >seq123 Length=109856 Score = 111 bits (122), Expect = 3e-19 Identities = 333/500 (67%), Gaps = 13/500 (3%) Strand=Plus/Minus Query 203838 TCTTG-TCCACCGTGAACTGAAT-GGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACAT 203895 ||||| || || ||||| || || |||| | | ||| | || ||| ||||||||||| Sbjct 49217 TCTTGGTCAACGGTGAATTGGATTGGCGCAGAAG-CAGCCATGGTTCGAAGATAGTACAT 49159 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||| ||||| || ||| | | ||| || | |||||| |||| | |||| || | | Sbjct 49158 GCCAGTCTTGAGACCCATTTTCCAGCCAGCGAAGTGCATAGAAGTGATCTTGCCCATGGT 49099 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 || || || |||||||||| ||||| || || ||| ||||| || ||||| | Sbjct 49098 TGGTTCCTTCAGATGAATGTTCAACGACTGTGACTGATCAATG-AAGGCACCTCGATCAG 49040 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 ||||||| | ||| || || |||| || |||||||| || |||||| | | || || Sbjct 49039 CGGCCATCTGGATGATAGTTCTCTGAGAGATCTCCCAGACAGTCTTGTAGAGTGCTTTGA 48980 Query 204075 TGT--GTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCA 204131 ||| ||| || | | || |||| ||| || || ||| ||||| || | ||| Sbjct 48979 TGTCGGTT--GGAATGT-TTGGTACGTTCTGAATTGAACCGCCCTCGGCAATGATTCTGT 48923 Query 204132 TCCTCGTCTCCTCCCCCCACATGCCCAACCTGATC-AGCTCCCGCACCAGGTGGGGGTTG 204190 || || | | ||| ||||| | |||| | | | || || | ||| || ||| Sbjct 48922 TCTTCATGTTGTCCGACCACA-GGCCAAGATCAACGAGATCTTTGAGCAGCCATGGATTG 48864 Query 204191 ATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCG 204250 | || |||||| || || | | ||| | |||| | | | |||| || |||| ||| Sbjct 48863 ACGACCTGAAATTCGCCTGCTAACACACGACGGGAGTAGATGTTGGATGTATATGGCTCG 48804 Query 204251 AACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGC 204310 || || || ||||| || ||||| | || ||| || |||||||| || | || Sbjct 48803 AAGCATTCATTATTGCCCAATATCTGCGACGTAGAGGCGGTCGGCATGGGTGCGACAAGA 48744 Query 204311 AGGGAGTTGCGCACACCGTA 204330 || || || || ||||| || Sbjct 48743 AGAGAATTTCGAACACCATA 48724 Score = 91.5 bits (100), Expect = 2e-13 Identities = 337/520 (65%), Gaps = 16/520 (3%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 ||| | ||| || ||||||||||| | |||| | |||| | || ||| ||| Sbjct 48252 CTCAATGATTTCTGTGCACAAGTTGGAGGACTTGATGGTGCCCAAGTTCTTCTGATTACT 48193 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCG 205002 || | ||| |||| ||||||||| | |||||| || |||| |||| |||| | Sbjct 48192 TTTTCTGTTGCAGGCGTCCTTGTAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTC 48133 Query 205003 CAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTACATC--CCTTGAGAC 205060 || ||| |||||| | | |||| | ||| | || | || |||| | Sbjct 48132 CAAGATGGCATACCACAACTTCTGTGCCTTGA-TTGTCTGTCGGCC-TCGGCCTTCCTTC 48075 Query 205061 TCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACAT 205120 || || || | |||| ||| | || || |||||| ||| | |||||| | Sbjct 48074 TCATACTTCTCGAACAGAGCCTCGAACTCCTCACCGTAGCAGTCAGATAAACCTGGAGCT 48015 Query 205121 TTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTC---ACCCTCTCCATAAACAGG 205177 | ||||| || | |||| ||| ||| ||| |||| |||| || ||| ||||| Sbjct 48014 TCGTTGGGGCAGAAGAGAGTCCAG-TCTC--CGTTTTTCTCAACCCGCTTCATGAACAGA 47958 Query 205178 TCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTC 205237 || |||| || ||||||||| |||||| || | || | | || | ||| ||||| Sbjct 47957 TCTGGAGTCCAGAGAGCGTAAAACAAATCACGAGCACGAACTTCTTCCTTTCCGTGGTTC 47898 Query 205238 TTTTTCAAGTCCAGCCAAGCCGCAATG---TCGGCGTGCCACGGCTCTAACCACACGGCC 205294 || | || |||||| | ||| | ||||||||||| ||||| | | ||||| Sbjct 47897 TTCCGGAGGTTCAGCCA---CTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAACGGCA 47841 Query 205295 ATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACT 205354 | || || || |||||||| || |||||||| || |||| | || || ||| Sbjct 47840 AAGGCACCAGGTCTCTTGTTGCCGCCCTGGTCGACGTATCGAGCAGTATTGTCAAAGACT 47781 Query 205355 CGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGC 205394 || ||||| || || || ||||| | || ||||| |||| Sbjct 47780 CGGAGCATAGGGACAAGGCCGTTTGATGTGCCGTTTGTGC 47741 >seq85 Length=245923 Score = 111 bits (122), Expect = 3e-19 Identities = 281/424 (66%), Gaps = 5/424 (1%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| || |||||||||||| | | || || ||||| || | || || || Sbjct 84171 CTTCTCGAAGAAATTGGTCTTGCCCGCTAGAGAGATGTTCTCCATAAAGTCAAACGGATT 84230 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | || | ||| |||||| || | | ||| || || ||| || || || || Sbjct 84231 GGTGACCTTGTAGTACTTCGGGTTACCCATACTTACCAACAGCCGGTCGGCAACGAACTC 84290 Query 159769 GATGTAGCTACA-CATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCG 159827 ||||| || | ||| ||| |||| || ||||| || |||||||||||| || | Sbjct 84291 AATGTA-CTGCTTCATGAGCTTCGAGTTCATGCCCAGTAGAGCAACGGGGAGCGCCTCGG 84349 Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC 159887 || || || | ||| |||| ||| || ||| | || | || | |||| | Sbjct 84350 TGAGGAATTCTTGCTCGATCTGGACGGCCTCGACGATGATGGCCTGGATAAGTTCCTTTG 84409 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 || | || ||| | | ||| ||||||||||||||| ||||| |||| Sbjct 84410 AGGGGCGGTGGTTAAGGTG---CGAGAGCAGCAGGCACGCAAAGTCGGTGTGCATGCCCT 84466 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 ||||||| ||||| | |||||||| | | | ||||| ||||||| || ||| |||| Sbjct 84467 CGTCCCGGGAGATAAGTTCGTTGGAGAAGGTAAGGCCGGGCATGAGACCTCGCTTCTTGA 84526 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCA 160067 |||| || |||| || || | ||| || ||||| || ||||| || ||||| || | Sbjct 84527 GCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATACCTTCCACAGCGGCAAAGGCGA 84586 Query 160068 CGAG 160071 | || Sbjct 84587 CCAG 84590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795153043141520