Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq123 111 3e-19
seq85 111 3e-19
>seq123
Length=109856
Score = 111 bits (122), Expect = 3e-19
Identities = 333/500 (67%), Gaps = 13/500 (3%)
Strand=Plus/Minus
Query 203838 TCTTG-TCCACCGTGAACTGAAT-GGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACAT 203895
||||| || || ||||| || || |||| | | ||| | || ||| |||||||||||
Sbjct 49217 TCTTGGTCAACGGTGAATTGGATTGGCGCAGAAG-CAGCCATGGTTCGAAGATAGTACAT 49159
Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955
||| ||||| || ||| | | ||| || | |||||| |||| | |||| || | |
Sbjct 49158 GCCAGTCTTGAGACCCATTTTCCAGCCAGCGAAGTGCATAGAAGTGATCTTGCCCATGGT 49099
Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014
|| || || |||||||||| ||||| || || ||| ||||| || ||||| |
Sbjct 49098 TGGTTCCTTCAGATGAATGTTCAACGACTGTGACTGATCAATG-AAGGCACCTCGATCAG 49040
Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074
||||||| | ||| || || |||| || |||||||| || |||||| | | || ||
Sbjct 49039 CGGCCATCTGGATGATAGTTCTCTGAGAGATCTCCCAGACAGTCTTGTAGAGTGCTTTGA 48980
Query 204075 TGT--GTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCA 204131
||| ||| || | | || |||| ||| || || ||| ||||| || | |||
Sbjct 48979 TGTCGGTT--GGAATGT-TTGGTACGTTCTGAATTGAACCGCCCTCGGCAATGATTCTGT 48923
Query 204132 TCCTCGTCTCCTCCCCCCACATGCCCAACCTGATC-AGCTCCCGCACCAGGTGGGGGTTG 204190
|| || | | ||| ||||| | |||| | | | || || | ||| || |||
Sbjct 48922 TCTTCATGTTGTCCGACCACA-GGCCAAGATCAACGAGATCTTTGAGCAGCCATGGATTG 48864
Query 204191 ATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCG 204250
| || |||||| || || | | ||| | |||| | | | |||| || |||| |||
Sbjct 48863 ACGACCTGAAATTCGCCTGCTAACACACGACGGGAGTAGATGTTGGATGTATATGGCTCG 48804
Query 204251 AACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGC 204310
|| || || ||||| || ||||| | || ||| || |||||||| || | ||
Sbjct 48803 AAGCATTCATTATTGCCCAATATCTGCGACGTAGAGGCGGTCGGCATGGGTGCGACAAGA 48744
Query 204311 AGGGAGTTGCGCACACCGTA 204330
|| || || || ||||| ||
Sbjct 48743 AGAGAATTTCGAACACCATA 48724
Score = 91.5 bits (100), Expect = 2e-13
Identities = 337/520 (65%), Gaps = 16/520 (3%)
Strand=Plus/Minus
Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942
||| | ||| || ||||||||||| | |||| | |||| | || ||| |||
Sbjct 48252 CTCAATGATTTCTGTGCACAAGTTGGAGGACTTGATGGTGCCCAAGTTCTTCTGATTACT 48193
Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCG 205002
|| | ||| |||| ||||||||| | |||||| || |||| |||| |||| |
Sbjct 48192 TTTTCTGTTGCAGGCGTCCTTGTAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTC 48133
Query 205003 CAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTACATC--CCTTGAGAC 205060
|| ||| |||||| | | |||| | ||| | || | || |||| |
Sbjct 48132 CAAGATGGCATACCACAACTTCTGTGCCTTGA-TTGTCTGTCGGCC-TCGGCCTTCCTTC 48075
Query 205061 TCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACAT 205120
|| || || | |||| ||| | || || |||||| ||| | |||||| |
Sbjct 48074 TCATACTTCTCGAACAGAGCCTCGAACTCCTCACCGTAGCAGTCAGATAAACCTGGAGCT 48015
Query 205121 TTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTC---ACCCTCTCCATAAACAGG 205177
| ||||| || | |||| ||| ||| ||| |||| |||| || ||| |||||
Sbjct 48014 TCGTTGGGGCAGAAGAGAGTCCAG-TCTC--CGTTTTTCTCAACCCGCTTCATGAACAGA 47958
Query 205178 TCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTC 205237
|| |||| || ||||||||| |||||| || | || | | || | ||| |||||
Sbjct 47957 TCTGGAGTCCAGAGAGCGTAAAACAAATCACGAGCACGAACTTCTTCCTTTCCGTGGTTC 47898
Query 205238 TTTTTCAAGTCCAGCCAAGCCGCAATG---TCGGCGTGCCACGGCTCTAACCACACGGCC 205294
|| | || |||||| | ||| | ||||||||||| ||||| | | |||||
Sbjct 47897 TTCCGGAGGTTCAGCCA---CTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAACGGCA 47841
Query 205295 ATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACT 205354
| || || || |||||||| || |||||||| || |||| | || || |||
Sbjct 47840 AAGGCACCAGGTCTCTTGTTGCCGCCCTGGTCGACGTATCGAGCAGTATTGTCAAAGACT 47781
Query 205355 CGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGC 205394
|| ||||| || || || ||||| | || ||||| ||||
Sbjct 47780 CGGAGCATAGGGACAAGGCCGTTTGATGTGCCGTTTGTGC 47741
>seq85
Length=245923
Score = 111 bits (122), Expect = 3e-19
Identities = 281/424 (66%), Gaps = 5/424 (1%)
Strand=Plus/Plus
Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708
||||||||| || |||||||||||| | | || || ||||| || | || || ||
Sbjct 84171 CTTCTCGAAGAAATTGGTCTTGCCCGCTAGAGAGATGTTCTCCATAAAGTCAAACGGATT 84230
Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768
| || | ||| |||||| || | | ||| || || ||| || || || ||
Sbjct 84231 GGTGACCTTGTAGTACTTCGGGTTACCCATACTTACCAACAGCCGGTCGGCAACGAACTC 84290
Query 159769 GATGTAGCTACA-CATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCG 159827
||||| || | ||| ||| |||| || ||||| || |||||||||||| || |
Sbjct 84291 AATGTA-CTGCTTCATGAGCTTCGAGTTCATGCCCAGTAGAGCAACGGGGAGCGCCTCGG 84349
Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC 159887
|| || || | ||| |||| ||| || ||| | || | || | |||| |
Sbjct 84350 TGAGGAATTCTTGCTCGATCTGGACGGCCTCGACGATGATGGCCTGGATAAGTTCCTTTG 84409
Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947
|| | || ||| | | ||| ||||||||||||||| ||||| ||||
Sbjct 84410 AGGGGCGGTGGTTAAGGTG---CGAGAGCAGCAGGCACGCAAAGTCGGTGTGCATGCCCT 84466
Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007
||||||| ||||| | |||||||| | | | ||||| ||||||| || ||| ||||
Sbjct 84467 CGTCCCGGGAGATAAGTTCGTTGGAGAAGGTAAGGCCGGGCATGAGACCTCGCTTCTTGA 84526
Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCA 160067
|||| || |||| || || | ||| || ||||| || ||||| || ||||| || |
Sbjct 84527 GCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATACCTTCCACAGCGGCAAAGGCGA 84586
Query 160068 CGAG 160071
| ||
Sbjct 84587 CCAG 84590
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795153043141520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |