Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq154 129 1e-24
seq43 91.5 3e-13
seq123 87.8 4e-12
seq102 87.8 4e-12
>seq154
Length=71981
Score = 129 bits (142), Expect = 1e-24
Identities = 160/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
||| | |||||| |||||||| || || ||||| || || | |||||| || | ||| ||
Sbjct 41467 TCGCAATCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGACAAGGT 41408
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
| ||||| |||||||| || || |||||||| | ||||||||||| || ||| ||
Sbjct 41407 TCGACCATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGGAATACC 41348
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
||| || || || || ||| ||| |||| ||| || | || ||| || || |
Sbjct 41347 TTCCTTGTCTTGGATTTTCGACTTAACGTTATCGATGGTATCAGATGATTCCACTTCGAG 41288
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || ||||||||||| |||||||||||
Sbjct 41287 TGTTATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTG 41249
Score = 127 bits (140), Expect = 5e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||||| || || ||||| |||||||| ||||| |||| ||||| ||| ||||||
Sbjct 41238 CGAAGTCGTAGAACTAGGTGAAGAGTCGATTCCTTCTGGATATTGTAATCACTCAAAGTT 41179
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || |||||||| ||||| || || |||||||| ||||||||||| ||| ||| ||
Sbjct 41178 CGGCCGTCTTCCAGTTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGGGAGGAATACCC 41119
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| || || ||| || |||| ||| || | | || || || |
Sbjct 41118 TCCTTATCCTGGATTTTGCTCTTGACATTGTCGATGGTATCGGAAGACTCAACCTCGAGA 41059
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| |||||||| || | || ||||||||||| ||
Sbjct 41058 GTGATTGTCTTACCAGTCAATGTCTTCACAAAAATCTG 41021
Score = 105 bits (116), Expect = 2e-17
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||||| || || | ||| || || |||||| || | |||||| |||| | |||
Sbjct 41694 CGAAGTCGGAGAACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCAGAAAGAGTA 41635
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || |||| ||||||||||| ||||| || || ||||| ||||| ||| ||
Sbjct 41634 CGACCGTCCTCCAATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGCGGAATACCC 41575
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| || |||| ||||| | | || || |||||
Sbjct 41574 TCCTTGTCCTGGATCTTGGACTTTACATTGTCGATAGTGTCAGAGCTCTCAACCTCCAAG 41515
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||| || ||||| || ||||| ||||||||
Sbjct 41514 GTAATTGTCTTGCCGGTGAGTGTCTTCACGAAAATTTG 41477
>seq43
Length=153456
Score = 91.5 bits (100), Expect = 3e-13
Identities = 89/112 (79%), Gaps = 2/112 (2%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAG- 199466
|||||||| || || ||||| |||||||||||||| |||| ||||||||| || || |
Sbjct 109522 TCGAAGTCGTAGTACCAGGTGTAGAGTCGACTCCTTCTGGATGTTGTAGTC-GCTAAGGG 109464
Query 199467 TCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518
| | ||||| || || ||||| ||||||||||| | |||||||| || ||
Sbjct 109463 TGCGACCATCCTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGCTGATCAGG 109412
>seq123
Length=109856
Score = 87.8 bits (96), Expect = 4e-12
Identities = 171/250 (68%), Gaps = 2/250 (1%)
Strand=Plus/Minus
Query 167767 GGCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTG 167826
|||||||||||||| ||||| || | ||| ||| | || ||| |||| ||| |
Sbjct 48180 GGCGTCCTTGTAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTCCAAGATGGCATA 48121
Query 167827 CCA-AAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCAT 167885
||| || ||| || || || | || || ||| ||||| || || || ||||
Sbjct 48120 CCACAACTTC-TGTGCCTTGATTGTCTGTCGGCCTCGGCCTTCCTTCTCATACTTCTCGA 48062
Query 167886 AGAGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAA 167945
| || | ||||| |||| ||||| || | ||| |||||||| || || || |
Sbjct 48061 ACAGAGCCTCGAACTCCTCACCGTAGCAGTCAGATAAACCTGGAGCTTCGTTGGGGCAGA 48002
Query 167946 AGAGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCG 168005
||||| |||| | ||| | |||| |||| ||||||||| || || | |||||| | |
Sbjct 48001 AGAGAGTCCAGTCTCCGTTTTTCTCAACCCGCTTCATGAACAGATCTGGAGTCCAGAGAG 47942
Query 168006 CGTAGAACAA 168015
|||| |||||
Sbjct 47941 CGTAAAACAA 47932
>seq102
Length=189570
Score = 87.8 bits (96), Expect = 4e-12
Identities = 128/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
||||||| | ||||||||||| | ||| | |||||||||||||||||||| ||||| |
Sbjct 7822 CCTTTTGAATGTTGTAGTCAGAGAGAGTTCGGCCATCTTCCAGCTGCTTTCCCGCGAAAA 7763
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559
| | || |||||||| || || || || |||| ||||| ||| || |
Sbjct 7762 TCAATCGTTGCTGGTCTGGCGGGATACCCTCCTTGACCTGGATCTTGCTCTTGACATTGT 7703
Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619
||| ||||||| | || || || | ||||| ||||| ||||| || || || || |
Sbjct 7702 CGATTGTGTCTGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTTACGA 7643
Query 199620 A 199620
|
Sbjct 7642 A 7642
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178918322229539
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |