Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq154 129 1e-24 seq43 91.5 3e-13 seq123 87.8 4e-12 seq102 87.8 4e-12 >seq154 Length=71981 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| | |||||| |||||||| || || ||||| || || | |||||| || | ||| || Sbjct 41467 TCGCAATCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGACAAGGT 41408 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||| |||||||| || || |||||||| | ||||||||||| || ||| || Sbjct 41407 TCGACCATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGGAATACC 41348 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || || || ||| ||| |||| ||| || | || ||| || || | Sbjct 41347 TTCCTTGTCTTGGATTTTCGACTTAACGTTATCGATGGTATCAGATGATTCCACTTCGAG 41288 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||||||||| ||||||||||| Sbjct 41287 TGTTATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTG 41249 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || || ||||| |||||||| ||||| |||| ||||| ||| |||||| Sbjct 41238 CGAAGTCGTAGAACTAGGTGAAGAGTCGATTCCTTCTGGATATTGTAATCACTCAAAGTT 41179 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || |||||||| ||||| || || |||||||| ||||||||||| ||| ||| || Sbjct 41178 CGGCCGTCTTCCAGTTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGGGAGGAATACCC 41119 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| || || ||| || |||| ||| || | | || || || | Sbjct 41118 TCCTTATCCTGGATTTTGCTCTTGACATTGTCGATGGTATCGGAAGACTCAACCTCGAGA 41059 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||| || | || ||||||||||| || Sbjct 41058 GTGATTGTCTTACCAGTCAATGTCTTCACAAAAATCTG 41021 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || || | ||| || || |||||| || | |||||| |||| | ||| Sbjct 41694 CGAAGTCGGAGAACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCAGAAAGAGTA 41635 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || |||| ||||||||||| ||||| || || ||||| ||||| ||| || Sbjct 41634 CGACCGTCCTCCAATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGCGGAATACCC 41575 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| ||||| | | || || ||||| Sbjct 41574 TCCTTGTCCTGGATCTTGGACTTTACATTGTCGATAGTGTCAGAGCTCTCAACCTCCAAG 41515 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || ||||| |||||||| Sbjct 41514 GTAATTGTCTTGCCGGTGAGTGTCTTCACGAAAATTTG 41477 >seq43 Length=153456 Score = 91.5 bits (100), Expect = 3e-13 Identities = 89/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAG- 199466 |||||||| || || ||||| |||||||||||||| |||| ||||||||| || || | Sbjct 109522 TCGAAGTCGTAGTACCAGGTGTAGAGTCGACTCCTTCTGGATGTTGTAGTC-GCTAAGGG 109464 Query 199467 TCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | | ||||| || || ||||| ||||||||||| | |||||||| || || Sbjct 109463 TGCGACCATCCTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGCTGATCAGG 109412 >seq123 Length=109856 Score = 87.8 bits (96), Expect = 4e-12 Identities = 171/250 (68%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 167767 GGCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTG 167826 |||||||||||||| ||||| || | ||| ||| | || ||| |||| ||| | Sbjct 48180 GGCGTCCTTGTAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTCCAAGATGGCATA 48121 Query 167827 CCA-AAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCAT 167885 ||| || ||| || || || | || || ||| ||||| || || || |||| Sbjct 48120 CCACAACTTC-TGTGCCTTGATTGTCTGTCGGCCTCGGCCTTCCTTCTCATACTTCTCGA 48062 Query 167886 AGAGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAA 167945 | || | ||||| |||| ||||| || | ||| |||||||| || || || | Sbjct 48061 ACAGAGCCTCGAACTCCTCACCGTAGCAGTCAGATAAACCTGGAGCTTCGTTGGGGCAGA 48002 Query 167946 AGAGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCG 168005 ||||| |||| | ||| | |||| |||| ||||||||| || || | |||||| | | Sbjct 48001 AGAGAGTCCAGTCTCCGTTTTTCTCAACCCGCTTCATGAACAGATCTGGAGTCCAGAGAG 47942 Query 168006 CGTAGAACAA 168015 |||| ||||| Sbjct 47941 CGTAAAACAA 47932 >seq102 Length=189570 Score = 87.8 bits (96), Expect = 4e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||| | ||||||||||| | ||| | |||||||||||||||||||| ||||| | Sbjct 7822 CCTTTTGAATGTTGTAGTCAGAGAGAGTTCGGCCATCTTCCAGCTGCTTTCCCGCGAAAA 7763 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | || |||||||| || || || || |||| ||||| ||| || | Sbjct 7762 TCAATCGTTGCTGGTCTGGCGGGATACCCTCCTTGACCTGGATCTTGCTCTTGACATTGT 7703 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| ||||||| | || || || | ||||| ||||| ||||| || || || || | Sbjct 7702 CGATTGTGTCTGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTTACGA 7643 Query 199620 A 199620 | Sbjct 7642 A 7642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178918322229539