Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq154 107 2e-18 seq102 107 2e-18 seq43 84.2 2e-11 >seq154 Length=71981 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| |||| || | || ||| || |||| |||| ||| || || || ||||| || | Sbjct 41474 TGCCACCTCGCAATCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTG 41415 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | | || || | || || ||||| ||||| ||||| ||||| ||||||||||| | | Sbjct 41414 ACAAGGTTCGACCATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTG 41355 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | |||||||| ||| ||| ||| | | | | || || ||||||| Sbjct 41354 GAATACCTTCCTTGTCTTGGATTTTCGACTTAACGTTATCGATGGTATCAGATGATTCCA 41295 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | || ||||||||||| || || ||||| ||||| |||||||| Sbjct 41294 CTTCGAGTGTTATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCAT 41246 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| |||| |||||||||||| || || ||||| || || ||||| || |||| || Sbjct 41682 ACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCAGAAAGAGTACGACCGTCCTCC 41623 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | ||||| ||||| || |||| || ||||| || | ||| | | |||||||||| | Sbjct 41622 AATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGCGGAATACCCTCCTTGTCCTGG 41563 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTT 46561 ||||| ||| | | | | ||||| |||| || || |||| || || || Sbjct 41562 ATCTTGGACTTTACATTGTCGATAGTGTCAGAGCTC---TCAACCTCCAAGGTAATTGTC 41506 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || || || || || || |||||||| Sbjct 41505 TTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 41474 >seq102 Length=189570 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 ||||||| || |||||||| || ||||| || | || || |||||||| || ||||| | Sbjct 7822 CCTTTTGAATGTTGTAGTCAGAGAGAGTTCGGCCATCTTCCAGCTGCTTTCCCGCGAAAA 7763 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| || |||||||| | ||| | | ||||||| || |||||| |||||| | Sbjct 7762 TCAATCGTTGCTGGTCTGGCGGGATACCCTCCTTGACCTGGATCTTGCTCTTGACATTGT 7703 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||| || || || || | |||||||| ||||||||||| || || || | Sbjct 7702 CGATTGTGTCTGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTTACGA 7643 Query 46584 AG 46585 || Sbjct 7642 AG 7641 >seq43 Length=153456 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| || ||||| | || ||||| |||||||||||||| Sbjct 109492 CTCCTTCTGGATGTTGTAGTCGCTAAGGGTGCGACCATCCTCGAGTTGCTTGCCGGCGAA 109433 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 ||||| |||||||| || | || | | ||||||||| Sbjct 109432 GATCAATCGCTGCTGATCAGGTGGAATACCCTCCTTGTC 109394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565236866790840