Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq154 107 2e-18
seq102 107 2e-18
seq43 84.2 2e-11
>seq154
Length=71981
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| |||| || | || ||| || |||| |||| ||| || || || ||||| || |
Sbjct 41474 TGCCACCTCGCAATCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTG 41415
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| | || || | || || ||||| ||||| ||||| ||||| ||||||||||| | |
Sbjct 41414 ACAAGGTTCGACCATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTG 41355
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | | |||||||| ||| ||| ||| | | | | || || |||||||
Sbjct 41354 GAATACCTTCCTTGTCTTGGATTTTCGACTTAACGTTATCGATGGTATCAGATGATTCCA 41295
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| || | || ||||||||||| || || ||||| ||||| ||||||||
Sbjct 41294 CTTCGAGTGTTATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCAT 41246
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/212 (70%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||| |||| |||||||||||| || || ||||| || || ||||| || |||| ||
Sbjct 41682 ACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCAGAAAGAGTACGACCGTCCTCC 41623
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
| ||||| ||||| || |||| || ||||| || | ||| | | |||||||||| |
Sbjct 41622 AATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGCGGAATACCCTCCTTGTCCTGG 41563
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTT 46561
||||| ||| | | | | ||||| |||| || || |||| || || ||
Sbjct 41562 ATCTTGGACTTTACATTGTCGATAGTGTCAGAGCTC---TCAACCTCCAAGGTAATTGTC 41506
Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||||| || || || || || || ||||||||
Sbjct 41505 TTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 41474
>seq102
Length=189570
Score = 107 bits (118), Expect = 2e-18
Identities = 133/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
||||||| || |||||||| || ||||| || | || || |||||||| || ||||| |
Sbjct 7822 CCTTTTGAATGTTGTAGTCAGAGAGAGTTCGGCCATCTTCCAGCTGCTTTCCCGCGAAAA 7763
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
|||| || |||||||| | ||| | | ||||||| || |||||| |||||| |
Sbjct 7762 TCAATCGTTGCTGGTCTGGCGGGATACCCTCCTTGACCTGGATCTTGCTCTTGACATTGT 7703
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | ||||| || || || || | |||||||| ||||||||||| || || || |
Sbjct 7702 CGATTGTGTCTGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTTACGA 7643
Query 46584 AG 46585
||
Sbjct 7642 AG 7641
>seq43
Length=153456
Score = 84.2 bits (92), Expect = 2e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||| || ||||| | || ||||| ||||||||||||||
Sbjct 109492 CTCCTTCTGGATGTTGTAGTCGCTAAGGGTGCGACCATCCTCGAGTTGCTTGCCGGCGAA 109433
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
||||| |||||||| || | || | | |||||||||
Sbjct 109432 GATCAATCGCTGCTGATCAGGTGGAATACCCTCCTTGTC 109394
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565236866790840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |