Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq85 298 5e-76
seq154 123 2e-23
seq102 98.7 1e-15
seq43 84.2 2e-11
>seq85
Length=245923
Score = 298 bits (330), Expect = 5e-76
Identities = 584/855 (68%), Gaps = 15/855 (2%)
Strand=Plus/Plus
Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650
||| || ||| ||||| || || ||||| ||||| || ||||| || || ||| |
Sbjct 84138 CATGACACCAGCCTTTTGGTAGTCACCCACTCGCTTCTCGAAGAAATTGGTCTTGCCCGC 84197
Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTG---CC 132707
| || ||| | |||||| || || || |||| ||||||| ||| | | ||
Sbjct 84198 TAGAGAGATGTTCTCCATAAAGTCAAACGGATTGGTGACCTTGTAGTACTTCGGGTTACC 84257
Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGC 132766
|| | | || | ||||| |||||| |||||||| ||||| ||| |||| | ||||
Sbjct 84258 CAT-ACTT--ACCAACAGCCGGTCGGCAACGAACTCAATGTACTGCTTCATGAGCTTCG- 84313
Query 132767 AATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826
| || | ||||| ||| || || ||||| |||||||| || ||||||||| ||
Sbjct 84314 AGTTCATGCCCAGTAGAGCAACGGGGAGCGCCTCGGTGAGGAATTCTTGCTCGATCTGGA 84373
Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA 132886
| || ||| || ||| || | | || || || || | ||| ||
Sbjct 84374 CGGCCTCGACGATGATGGCCTGGATAAGTTCCTTTGAGGGGCGGTGGTTAAGGTGCGAGA 84433
Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946
|| || ||| ||||||||| |||| ||||||||||| ||| || ||||||||| ||
Sbjct 84434 GCAGCAGGCACGCAAAGTCGGTGTGCATGCCCTCGTCCCGGGAGATAAGTTCGTTGGAGA 84493
Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006
| || | |||||||||||| || || || |||||||| || |||| |||||| ||| |
Sbjct 84494 AGGTAAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGG 84553
Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066
| ||||||| || || || || || || || ||||| |||| | | || |||| |||
Sbjct 84554 AGAAGAAGATACCTTCCACAGCGGCAAAGGCGACCAGACGCTGGGCAAAGGTGGACTCTC 84613
Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGA 133126
| |||||||| || |||||||| || || | | | | ||| || || || ||||
Sbjct 84614 GATCTGAAATCCAGCGGAGAGCCCATTCAGCTTTCTTTCTAATGCAAGGAATTGTATCGA 84673
Query 133127 TGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAAC--GCACGTAGGTGTCGATGAGGGT 133184
|||||| | | | | | | ||| | | || | | ||| ||||| |||||
Sbjct 84674 TGGCGTCGA--AGAGGTATTGTCTTTGCTTTGGCTCTTTAATGTATGTGTCAATGAGAAG 84731
Query 133185 CGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGC 133244
|| |||||||| ||| | ||| ||||| ||| || ||||| |||||||| || ||
Sbjct 84732 TGAGTACATTTCGCTGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAGCAGCGGGC 84791
Query 133245 CTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTC 133304
||| || || ||||| | ||| |||||||| || || |||||||||||||||||
Sbjct 84792 TTCGGGGACTTGGACTTCGCCGGAGAAGCGCTCGACAAGGTTCTCGTTGACGATGCCGTC 84851
Query 133305 GCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT---CAA 133361
||||||||| || || || ||||| | ||| | || |||| ||||| |
Sbjct 84852 CGAGGCGGCGAAGAAAGCGAGGACGTGGGAAACGAAGTAACGTTCGTCATCGTTGAGCTT 84911
Query 133362 GCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGC 133421
| | | ||||||| | || || |||||||| || || ||| ||||||| || || ||
Sbjct 84912 GTGGTGCCAGTCGTGGAGATCTTTCGACAGGTCGACTTCTTCGGCGGTCCAGAAGGAGGC 84971
Query 133422 CTCGGCTTTTTTGTA 133436
|||||||| |||||
Sbjct 84972 TTCGGCTTTCTTGTA 84986
>seq154
Length=71981
Score = 123 bits (136), Expect = 2e-23
Identities = 168/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|||||||| || ||||| || || || || ||||| ||||||||| | || ||||| ||
Sbjct 40787 AAAATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAATCC 40846
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
| |||| || | | | |||| || || | ||||| ||||| ||||| | ||
Sbjct 40847 AGTGACA-CGATCGACAATGTCAAGAGCAAGATTCAAGACAAGGAGGGCATTCCTCCTGA 40905
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||| || || || |||| ||| || || ||||| || |||| |||||| | | ||||||
Sbjct 40906 CCAGCAACGTCTGATTTTCGCTGGTAAGCAGCTTGAAGACGGTCGCACCTTGAGCGACTA 40965
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||| || || ||| | || || || |||||||| ||| | | ||||||
Sbjct 40966 CAACATTCAGAAAGAATCAACCCTCCACTTGGTGCTCCGTCTCCGTGGCGGC 41017
Score = 113 bits (124), Expect = 5e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| || || ||||| ||||| ||||||||||| || |||| || || | |
Sbjct 41246 ATGCAAATTTTTGTCAAAACTCTCACAGGCAAAACCATAACACTCGAAGTGGAATCATCT 41305
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | |||| |||| ||||||| ||||| || || ||||| | |||||
Sbjct 41306 GATACCATCGATAACG-TTAAGTCGAAAATCCAAGACAAGGAAGGTATTCCACCAGACCA 41364
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| | || | ||| |||||||||||||| || | || ||| | || |||||
Sbjct 41365 GCAGCGGTTGATCTTCGCAGGCAAACAGCTGGAGGATGGTCGAACCTTGTCAGATTACAA 41424
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||| || || || | || ||||| | |||||| | ||| |||| |||
Sbjct 41425 CATTCAGAAAGAGTCTACACTGCACCTTGTGCTGAGATTGCGAGGTGGC 41473
>seq102
Length=189570
Score = 98.7 bits (108), Expect = 1e-15
Identities = 136/184 (74%), Gaps = 6/184 (3%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
|||||||| || || |||||||| ||||||||| | || |||||| || | |||| |
Sbjct 7642 TTCGTAAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCAGACACAATC 7701
Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCC-GACCAACAGCGG 38369
| || | | |||| || |||| | ||| ||||| || |||||| ||||| || ||
Sbjct 7702 GACAATG--TCAAGAGCAAGATCCAGGTCAAGGAGGGTAT-CCCGCCAGACCAGCAACGA 7758
Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429
| |||| |||||| || |||||||| || | || || ||| ||||||||||| |||
Sbjct 7759 TTGATTTTCGCGGGAAAGCAGCTGGAAGATGGCCGAACTCTCTCTGACTACAACATTCAA 7818
Query 38430 AAGG 38433
||||
Sbjct 7819 AAGG 7822
>seq43
Length=153456
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| ||||| ||||| | || || ||||| | || | ||| ||||| || || ||
Sbjct 109394 GACAAGGAGGGTATTCCACCTGATCAGCAGCGATTGATCTTCGCCGGCAAGCAACTCGAG 109453
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|| | |||||||| | ||||||||||||||| ||||| |||| || || |||| ||
Sbjct 109454 GATGGTCGCACCCTTAGCGACTACAACATCCAGAAGGAGTCGACTCTACACCTGGTACTA 109513
Query 38457 CGTTTGAGAGGCGG 38470
|| | |||||||
Sbjct 109514 CGACTTCGAGGCGG 109527
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500171443281280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |