Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq85 298 5e-76 seq154 123 2e-23 seq102 98.7 1e-15 seq43 84.2 2e-11 >seq85 Length=245923 Score = 298 bits (330), Expect = 5e-76 Identities = 584/855 (68%), Gaps = 15/855 (2%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| ||||| || || ||||| ||||| || ||||| || || ||| | Sbjct 84138 CATGACACCAGCCTTTTGGTAGTCACCCACTCGCTTCTCGAAGAAATTGGTCTTGCCCGC 84197 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTG---CC 132707 | || ||| | |||||| || || || |||| ||||||| ||| | | || Sbjct 84198 TAGAGAGATGTTCTCCATAAAGTCAAACGGATTGGTGACCTTGTAGTACTTCGGGTTACC 84257 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGC 132766 || | | || | ||||| |||||| |||||||| ||||| ||| |||| | |||| Sbjct 84258 CAT-ACTT--ACCAACAGCCGGTCGGCAACGAACTCAATGTACTGCTTCATGAGCTTCG- 84313 Query 132767 AATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826 | || | ||||| ||| || || ||||| |||||||| || ||||||||| || Sbjct 84314 AGTTCATGCCCAGTAGAGCAACGGGGAGCGCCTCGGTGAGGAATTCTTGCTCGATCTGGA 84373 Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA 132886 | || ||| || ||| || | | || || || || | ||| || Sbjct 84374 CGGCCTCGACGATGATGGCCTGGATAAGTTCCTTTGAGGGGCGGTGGTTAAGGTGCGAGA 84433 Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 || || ||| ||||||||| |||| ||||||||||| ||| || ||||||||| || Sbjct 84434 GCAGCAGGCACGCAAAGTCGGTGTGCATGCCCTCGTCCCGGGAGATAAGTTCGTTGGAGA 84493 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | || | |||||||||||| || || || |||||||| || |||| |||||| ||| | Sbjct 84494 AGGTAAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGG 84553 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 | ||||||| || || || || || || || ||||| |||| | | || |||| ||| Sbjct 84554 AGAAGAAGATACCTTCCACAGCGGCAAAGGCGACCAGACGCTGGGCAAAGGTGGACTCTC 84613 Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGA 133126 | |||||||| || |||||||| || || | | | | ||| || || || |||| Sbjct 84614 GATCTGAAATCCAGCGGAGAGCCCATTCAGCTTTCTTTCTAATGCAAGGAATTGTATCGA 84673 Query 133127 TGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAAC--GCACGTAGGTGTCGATGAGGGT 133184 |||||| | | | | | | ||| | | || | | ||| ||||| ||||| Sbjct 84674 TGGCGTCGA--AGAGGTATTGTCTTTGCTTTGGCTCTTTAATGTATGTGTCAATGAGAAG 84731 Query 133185 CGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGC 133244 || |||||||| ||| | ||| ||||| ||| || ||||| |||||||| || || Sbjct 84732 TGAGTACATTTCGCTGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAGCAGCGGGC 84791 Query 133245 CTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTC 133304 ||| || || ||||| | ||| |||||||| || || ||||||||||||||||| Sbjct 84792 TTCGGGGACTTGGACTTCGCCGGAGAAGCGCTCGACAAGGTTCTCGTTGACGATGCCGTC 84851 Query 133305 GCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT---CAA 133361 ||||||||| || || || ||||| | ||| | || |||| ||||| | Sbjct 84852 CGAGGCGGCGAAGAAAGCGAGGACGTGGGAAACGAAGTAACGTTCGTCATCGTTGAGCTT 84911 Query 133362 GCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGC 133421 | | | ||||||| | || || |||||||| || || ||| ||||||| || || || Sbjct 84912 GTGGTGCCAGTCGTGGAGATCTTTCGACAGGTCGACTTCTTCGGCGGTCCAGAAGGAGGC 84971 Query 133422 CTCGGCTTTTTTGTA 133436 |||||||| ||||| Sbjct 84972 TTCGGCTTTCTTGTA 84986 >seq154 Length=71981 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || || || || ||||| ||||||||| | || ||||| || Sbjct 40787 AAAATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAATCC 40846 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| || | | | |||| || || | ||||| ||||| ||||| | || Sbjct 40847 AGTGACA-CGATCGACAATGTCAAGAGCAAGATTCAAGACAAGGAGGGCATTCCTCCTGA 40905 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| || || || |||| ||| || || ||||| || |||| |||||| | | |||||| Sbjct 40906 CCAGCAACGTCTGATTTTCGCTGGTAAGCAGCTTGAAGACGGTCGCACCTTGAGCGACTA 40965 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || || ||| | || || || |||||||| ||| | | |||||| Sbjct 40966 CAACATTCAGAAAGAATCAACCCTCCACTTGGTGCTCCGTCTCCGTGGCGGC 41017 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| ||||| ||||||||||| || |||| || || | | Sbjct 41246 ATGCAAATTTTTGTCAAAACTCTCACAGGCAAAACCATAACACTCGAAGTGGAATCATCT 41305 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| |||| ||||||| ||||| || || ||||| | ||||| Sbjct 41306 GATACCATCGATAACG-TTAAGTCGAAAATCCAAGACAAGGAAGGTATTCCACCAGACCA 41364 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | || | ||| |||||||||||||| || | || ||| | || ||||| Sbjct 41365 GCAGCGGTTGATCTTCGCAGGCAAACAGCTGGAGGATGGTCGAACCTTGTCAGATTACAA 41424 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| || || || | || ||||| | |||||| | ||| |||| ||| Sbjct 41425 CATTCAGAAAGAGTCTACACTGCACCTTGTGCTGAGATTGCGAGGTGGC 41473 >seq102 Length=189570 Score = 98.7 bits (108), Expect = 1e-15 Identities = 136/184 (74%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 |||||||| || || |||||||| ||||||||| | || |||||| || | |||| | Sbjct 7642 TTCGTAAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCAGACACAATC 7701 Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCC-GACCAACAGCGG 38369 | || | | |||| || |||| | ||| ||||| || |||||| ||||| || || Sbjct 7702 GACAATG--TCAAGAGCAAGATCCAGGTCAAGGAGGGTAT-CCCGCCAGACCAGCAACGA 7758 Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429 | |||| |||||| || |||||||| || | || || ||| ||||||||||| ||| Sbjct 7759 TTGATTTTCGCGGGAAAGCAGCTGGAAGATGGCCGAACTCTCTCTGACTACAACATTCAA 7818 Query 38430 AAGG 38433 |||| Sbjct 7819 AAGG 7822 >seq43 Length=153456 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| ||||| | || || ||||| | || | ||| ||||| || || || Sbjct 109394 GACAAGGAGGGTATTCCACCTGATCAGCAGCGATTGATCTTCGCCGGCAAGCAACTCGAG 109453 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | |||||||| | ||||||||||||||| ||||| |||| || || |||| || Sbjct 109454 GATGGTCGCACCCTTAGCGACTACAACATCCAGAAGGAGTCGACTCTACACCTGGTACTA 109513 Query 38457 CGTTTGAGAGGCGG 38470 || | ||||||| Sbjct 109514 CGACTTCGAGGCGG 109527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171443281280