Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq17 127 8e-24 seq154 125 3e-23 seq25 113 2e-19 >seq17 Length=466808 Score = 127 bits (140), Expect = 8e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 451220 AAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATG 451279 || |||||| ||||| ||| | || ||||| || ||||| ||||||||||| || ||| Sbjct 246913 AAGGGTGAAGAGAAAACCTTTACACCAGAAGAGATCTCATCGATGGTTCTTACCAAGATG 246972 Query 451280 AAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCC 451339 ||| || |||||| ||| ||||| | |||| | |||| || |||||||| || Sbjct 246973 CGAGAGACTGCAGAATCATACCTTGGTGGTACAGTCAACAATGCTGTCATTACTGTCCCA 247032 Query 451340 GCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTA 451399 || || |||||||| | || | || || || || ||||| || | || ||||| || Sbjct 247033 GCATACTTCAATGACTCTCAGAGACAGGCCACCAAGGATGCTGGTCTGATCGCTGGCTTG 247092 Query 451400 AATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 || |||||||| || || || || || || |||||||| Sbjct 247093 AACGTTCTTCGGATCATCAACGAGCCAACCGCAGCTGC 247130 >seq154 Length=71981 Score = 125 bits (138), Expect = 3e-23 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| || || || ||||| || || || || || ||||||||| Sbjct 41246 ATGCAAATTTTTGTCAAAACTCTCACAGGCAAAACCATAACACTCGAAGTGGAATCATCT 41305 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| || |||| ||||| ||||| |||||||| ||||| || || || Sbjct 41306 GATACCATCGATAACGTTAAGTCGAAAATCCAAGACAAGGAAGGTATTCCACCAGACCAG 41365 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || || || ||| |||| ||||| || || ||||| |||| ||| | ||||| || Sbjct 41366 CAGCGGTTGATCTTCGCAGGCAAACAGCTGGAGGATGGTCGAACCTTGTCAGATTACAAC 41425 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 ||| | || || | ||||| ||| | || | ||| || |||| Sbjct 41426 ATTCAGAAAGAGTCTACACTGCACCTTGTGCTGAGATTGCGAGG 41469 Score = 104 bits (114), Expect = 9e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| || || |||||||| || || || || ||||| || ||||| Sbjct 40789 AATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAATCCAG 40848 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | || || | | || || |||||||| ||||| || ||||||||||| || Sbjct 40849 TGACACGATCGACAATGTCAAGAGCAAGATTCAAGACAAGGAGGGCATTCCTCCTGACCA 40908 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 |||||| | |||||| | || || || |||||||| || | || ||| || || || Sbjct 40909 GCAACGTCTGATTTTCGCTGGTAAGCAGCTTGAAGACGGTCGCACCTTGAGCGACTACAA 40968 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | || || |||| || ||||| || Sbjct 40969 CATTCAGAAAGAATCAACCCTCCACTTGGT 40998 >seq25 Length=374142 Score = 113 bits (124), Expect = 2e-19 Identities = 239/354 (68%), Gaps = 2/354 (1%) Strand=Plus/Minus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303 ||||||||||| || | ||||||||| || ||||| ||| || || |||| || Sbjct 83821 CCTGAAGAAATCTCGGCCATGGTTCTTGGAAAGATGAAGGAAGTGGCTGAGGCATATGTT 83762 Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363 || |||||| | ||||| ||||||| ||||| || ||||| ||||| || || Sbjct 83761 GGCAAAAAAGTTACCCACGCAGTCGTTACTGTCCCCGCCTACTTCAACGATGCCCAGCGT 83702 Query 451364 CAAGCAACTAAAGATGCAGG-ACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGA 451422 ||||| || ||||| || || ||| || |||||||| | ||| || ||| | |||| || Sbjct 83701 CAAGCGACAAAAGACGCTGGTACA-ATCGCTGGTTTGACTGTCCTCCGAGTCGTTAACGA 83643 Query 451423 ACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaa 451482 ||| || || || ||| | || || || | | || || | ||||| | | Sbjct 83642 ACCAACGGCTGCGGCTATTGCTTACGGTTTGGACAAGATTGCCGACAAGAAAGAACGACA 83583 Query 451483 TATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGA 451542 || | |||| ||| | |||||||| ||| ||| || | ||||| | || || Sbjct 83582 AATCGTCGTATACGATCTCGGTGGAGGCACTTTCGATGTCTCACTCCTTTCCGTGGATGA 83523 Query 451543 TGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 || || || ||||| |||||| ||||| || ||||| || ||||| || Sbjct 83522 AGGTGTTTTCGAAGTCCTCGCAACCGCAGGTGACACCCATCTTGGTGGTGAGGA 83469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975712906885436