Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq17 127 8e-24
seq154 125 3e-23
seq25 113 2e-19
>seq17
Length=466808
Score = 127 bits (140), Expect = 8e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 451220 AAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATG 451279
|| |||||| ||||| ||| | || ||||| || ||||| ||||||||||| || |||
Sbjct 246913 AAGGGTGAAGAGAAAACCTTTACACCAGAAGAGATCTCATCGATGGTTCTTACCAAGATG 246972
Query 451280 AAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCC 451339
||| || |||||| ||| ||||| | |||| | |||| || |||||||| ||
Sbjct 246973 CGAGAGACTGCAGAATCATACCTTGGTGGTACAGTCAACAATGCTGTCATTACTGTCCCA 247032
Query 451340 GCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTA 451399
|| || |||||||| | || | || || || || ||||| || | || ||||| ||
Sbjct 247033 GCATACTTCAATGACTCTCAGAGACAGGCCACCAAGGATGCTGGTCTGATCGCTGGCTTG 247092
Query 451400 AATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437
|| |||||||| || || || || || || ||||||||
Sbjct 247093 AACGTTCTTCGGATCATCAACGAGCCAACCGCAGCTGC 247130
>seq154
Length=71981
Score = 125 bits (138), Expect = 3e-23
Identities = 162/224 (72%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | ||||| || ||||| || || || ||||| || || || || || |||||||||
Sbjct 41246 ATGCAAATTTTTGTCAAAACTCTCACAGGCAAAACCATAACACTCGAAGTGGAATCATCT 41305
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| ||| || |||| ||||| ||||| |||||||| ||||| || || ||
Sbjct 41306 GATACCATCGATAACGTTAAGTCGAAAATCCAAGACAAGGAAGGTATTCCACCAGACCAG 41365
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| || || || ||| |||| ||||| || || ||||| |||| ||| | ||||| ||
Sbjct 41366 CAGCGGTTGATCTTCGCAGGCAAACAGCTGGAGGATGGTCGAACCTTGTCAGATTACAAC 41425
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273
||| | || || | ||||| ||| | || | ||| || ||||
Sbjct 41426 ATTCAGAAAGAGTCTACACTGCACCTTGTGCTGAGATTGCGAGG 41469
Score = 104 bits (114), Expect = 9e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | || ||||| || || |||||||| || || || || ||||| || |||||
Sbjct 40789 AATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAATCCAG 40848
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||| | || || | | || || |||||||| ||||| || ||||||||||| ||
Sbjct 40849 TGACACGATCGACAATGTCAAGAGCAAGATTCAAGACAAGGAGGGCATTCCTCCTGACCA 40908
Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228
|||||| | |||||| | || || || |||||||| || | || ||| || || ||
Sbjct 40909 GCAACGTCTGATTTTCGCTGGTAAGCAGCTTGAAGACGGTCGCACCTTGAGCGACTACAA 40968
Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258
||| | || || |||| || ||||| ||
Sbjct 40969 CATTCAGAAAGAATCAACCCTCCACTTGGT 40998
>seq25
Length=374142
Score = 113 bits (124), Expect = 2e-19
Identities = 239/354 (68%), Gaps = 2/354 (1%)
Strand=Plus/Minus
Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303
||||||||||| || | ||||||||| || ||||| ||| || || |||| ||
Sbjct 83821 CCTGAAGAAATCTCGGCCATGGTTCTTGGAAAGATGAAGGAAGTGGCTGAGGCATATGTT 83762
Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363
|| |||||| | ||||| ||||||| ||||| || ||||| ||||| || ||
Sbjct 83761 GGCAAAAAAGTTACCCACGCAGTCGTTACTGTCCCCGCCTACTTCAACGATGCCCAGCGT 83702
Query 451364 CAAGCAACTAAAGATGCAGG-ACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGA 451422
||||| || ||||| || || ||| || |||||||| | ||| || ||| | |||| ||
Sbjct 83701 CAAGCGACAAAAGACGCTGGTACA-ATCGCTGGTTTGACTGTCCTCCGAGTCGTTAACGA 83643
Query 451423 ACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaa 451482
||| || || || ||| | || || || | | || || | ||||| | |
Sbjct 83642 ACCAACGGCTGCGGCTATTGCTTACGGTTTGGACAAGATTGCCGACAAGAAAGAACGACA 83583
Query 451483 TATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGA 451542
|| | |||| ||| | |||||||| ||| ||| || | ||||| | || ||
Sbjct 83582 AATCGTCGTATACGATCTCGGTGGAGGCACTTTCGATGTCTCACTCCTTTCCGTGGATGA 83523
Query 451543 TGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596
|| || || ||||| |||||| ||||| || ||||| || ||||| ||
Sbjct 83522 AGGTGTTTTCGAAGTCCTCGCAACCGCAGGTGACACCCATCTTGGTGGTGAGGA 83469
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975712906885436
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |