Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq17 114 1e-19 seq47 93.3 3e-13 seq12 89.7 4e-12 >seq17 Length=466808 Score = 114 bits (126), Expect = 1e-19 Identities = 908/1453 (62%), Gaps = 25/1453 (2%) Strand=Plus/Minus Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 |||||||||||||| | ||| || ||||| || || ||||| || |||| |||| ||| Sbjct 248048 ATACCATTGGCATCAACATCGAAGGTGACCTCGATCTGAGGAACACCTCGGGGAGCTGGT 247989 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393 ||||| || | | || | || || ||| || || || || || ||| Sbjct 247988 GGGATACCGGAGAGTTCGAACTTGCCGAGCAGATTGTTGTCCTTGGTTCGGGCACGCTCA 247929 Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT- 517452 |||||||| | || || || | | || || || || | || | ||| ||| Sbjct 247928 CCCTCGAAGACCTGAATGAGGACACCTGGCTGGTTGTCAGAGAAGGTAGAGAATG-TCTC 247870 Query 517453 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG-GTCATAATACCACCTG 517511 ||| || || || || || ||||||| | || | || | ||||| | ||| |||| Sbjct 247869 GGACTTCTTGGTTGGGATGGTGGTGTTTCGCTTGATCA-ATGGAGTCATGACACCGCCTG 247811 Query 517512 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 517571 | || || | ||| | ||| || || | || || | || ||| || | | | || Sbjct 247810 CAGTCTCGATACCGATAGACAGTGGTGCAACGTCGAGCAG--CAAGATCTCGTTGGTTGA 247753 Query 517572 CATC-----AGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAG 517625 | || ||| | ||| |||||| |||| || || | |||||||| ||||| |||| Sbjct 247752 CTTCGAAGAAGTATCTCCAGACAAGA-TAGCAGCCTGGACGGCAGCACCGTATGCGACAG 247694 Query 517626 CTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTT 517685 | ||||| || || | | | || | | || || ||||| |||| || | |||| Sbjct 247693 CCTCATCGGGGTTGATCGACTTGTTGGGCTCCTTGCCGTTGAAGAAATCAGAGACGAGTT 247634 Query 517686 GTCTTACCT-TAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 517744 ||| | | || || |||| || || ||||| || ||||| || || || || Sbjct 247633 -TCTGGATTCTTGGGATTCGAGTGGAACCACCAACCAAGACAATCTCGTGGACGGAAGAC 247575 Query 517745 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAG 517804 || || | || | ||| | ||| ||||| || || | | ||| || | | Sbjct 247574 TTGTCAATCTTGGCATCTCGGAGCACTCGCTCAACTGGCTCCATGGTGGATCTGAAAAGG 247515 Query 517805 TCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCG 517864 || || | ||||| ||| |||| ||||| | | || | || || || || Sbjct 247514 TCCTGGCACAACTCTTCAAATCGGGCTCGAGTAATGGAGGTATAGAAGTCGATACCCTCA 247455 Query 517865 AACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGT 517924 | | || || | |||||| | || || | || || || || | || || || ||| Sbjct 247454 TATAGGGAGTCGATTTCAATAGATGTCTGTGCGGACGATGAGAGAGTTCGCTTGGCGCGT 247395 Query 517925 TCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAA-TCTGTTTTATA 517983 || || || || | || | ||| | || ||| | | || || ||| | || | Sbjct 247394 TCGCAAGCGGTTCGGAGACGTCGAAGAGCACGTGC-GTTGGAAGAAAGGTCTTTCTTGTG 247336 Query 517984 TTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCC 518043 ||||||||||| || | ||| | | || || | || || || |||||||| || Sbjct 247335 CTTTCTCTTGAACTCGTTGACAAAGTGGTTGACGAGTCTGTTGTCGAAGTCTTCACCACC 247276 Query 518044 CAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAG 518103 ||| | ||||| || | |||| | || | || | || ||||| | || ||| || Sbjct 247275 CAAGTGAGTATCACCGGCAGTAGACTTGACCTCAAAGATACCCTCTTCGATAGTCAACAG 247216 Query 518104 AGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG 518163 | ||||| ||| ||||| |||| ||||| || || || || || || Sbjct 247215 GGACACATCGAAGGTACCACCGCCCAAGTCAAAGATGAGGACGTTTCGCTCACCCTCAGT 247156 Query 518164 GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 518223 ||||| || ||||| || || | ||||| || ||||| || || || || | | ||| Sbjct 247155 CTTTTTGTCGAGACCGTAGGCGATGGCAGCTGCGGTTGGCTCGTTGATGATCCGAAGAAC 247096 Query 518224 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 518283 || | ||||| || || ||||| || ||||| ||||| || || || || || || Sbjct 247095 GTTCAAGCCAGCGATCAGACCAGCATCCTTGGTGGCCTGTCTCTGAGAGTCATTGAAGTA 247036 Query 518284 TGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTG 518343 ||| || |||||||| || |||| | ||| ||||| || | ||| || | Sbjct 247035 TGCTGGGACAGTAATGACAGCATTGTTGACTGTACCACCAAGGTATGATTCTGCAGTCTC 246976 Query 518344 TTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCA-T 518402 | ||| || | | || ||| ||||| || | |||||| | | | || |||| Sbjct 246975 TCGCATCTTGGTAAGAACCATCGATGAGATCTCTTCTGGTGTAAAGGTTTTCTCTTCACC 246916 Query 518403 TTTGATATGATACTTCA-AAAT--ATGGTTTATTACCAACATTAATAACTTTAAATGGCC 518459 |||| || | || | || ||| || ||| | | || || || || Sbjct 246915 CTTGA----ATTCGACAGAGATCACTGGCTTGCCACCCTTGTCGAGGACCTTGAAGGGGA 246860 Query 518460 AGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 518519 ||| |||||||||| |||||| | || || | | ||| || | |||||| | Sbjct 246859 AGTGCTTCATATCTGCTTGAACTTCAGGATCGGCGAACTTGCGACCTATCAGTCGTTTCG 246800 Query 518520 CATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCA 518579 | || || | || |||| ||| || || || | || | || || | || || |||| Sbjct 246799 CGTCGAAGACTGTGTTGGCTGGGTTCATGGCGACCTGGTTCTTTGCAGAGTCACCGATCA 246740 Query 518580 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 518639 | ||| || || || || | ||| | || || || || ||||| ||||| ||||| | Sbjct 246739 GTCTTTCGGTGTCGGTGAAAGCGACAAAAGAGGGGGTAGTTCGATTGCCTTGGTCATTGG 246680 Query 518640 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAAT 518699 |||| ||||| | | | ||| | | | ||| || || | || || || |||| Sbjct 246679 CAATGATTTCGATTCTGTCATCTCTGAAAATACCCACGCAGGAGTATGTGGTACCCAAAT 246620 Query 518700 CAATACCAATAGC 518712 ||||||| || || Sbjct 246619 CAATACCGATTGC 246607 >seq47 Length=319710 Score = 93.3 bits (102), Expect = 3e-13 Identities = 141/200 (71%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 |||||| || |||||||||| |||| | || | ||||| || || ||||| || Sbjct 4376 ACATCAAAAGTACCACCACCCAAATCATAGATCATGACATTTCGCTCCTTCTCTTGCTTG 4435 Query 518168 TTAT---CAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 | | || || || || | ||| || ||||| || || || ||||| | | || Sbjct 4436 CCAGATCCGAGGCCGTAGGCGATAGCGGCCGCAGTGGGCTCGTTGATAATACGGAGGACG 4495 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 |||||||| || || ||| || ||||| |||||||||||||| ||||| || ||| Sbjct 4496 TTAAGACCGGCGATGGATCCGGCGTCTTTCGTGGCTTGTCTTTGATTGTCGTTGAAGTAT 4555 Query 518285 GCAGGAACAGTAATAACGGC 518304 || ||||| || |||||||| Sbjct 4556 GCTGGAACTGTGATAACGGC 4575 >seq12 Length=749661 Score = 89.7 bits (98), Expect = 4e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 671660 GAATTTTTCTTCCAAGTAATGGCAGGTCGTGAAGGTATTATTAATACGGCTATTAAAACT 671719 |||||||||||||| | ||||| ||||| |||||| | ||| |||| ||| | || || Sbjct 276409 GAATTTTTCTTCCACGCCATGGCTGGTCGAGAAGGTCTGATTGATACAGCTGTCAAGACA 276350 Query 671720 GCTGATACTGGTTATATTCAAAGAAAACTTGTTAAAATGCTCGAAGA 671766 ||||| |||||||| || || |||| |||||| ||| || ||||| Sbjct 276349 GCTGAGACTGGTTACATACAGAGAAGACTTGTCAAAGCTCTGGAAGA 276303 Score = 86.0 bits (94), Expect = 5e-11 Identities = 106/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 668849 TTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCT 668908 ||||| || ||||||||||| | ||| ||| | ||||| ||||||||||| | || Sbjct 277866 TTAAG-GGCAAAGAAGGTCGACTGAGACAAAACCTAATGGGCAAACGTGTCGACTTCTCC 277808 Query 668909 GCACGTACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTT 668968 || ||||| || |||||| ||||||||| | | ||| ||||||| || || |||| | Sbjct 277807 GCCCGTACCGTCATTACTGGTGATCCCAACTTGTCCCTCGATGAAGTCGGCGTACCTCGT 277748 Query 668969 ATTATTGCTAAAAATCTTACTTTT 668992 | ||||| | || || || ||| Sbjct 277747 AGCATTGCCAGAACACTGACATTT 277724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780811631745202