Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq17 114 1e-19
seq47 93.3 3e-13
seq12 89.7 4e-12
>seq17
Length=466808
Score = 114 bits (126), Expect = 1e-19
Identities = 908/1453 (62%), Gaps = 25/1453 (2%)
Strand=Plus/Minus
Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333
|||||||||||||| | ||| || ||||| || || ||||| || |||| |||| |||
Sbjct 248048 ATACCATTGGCATCAACATCGAAGGTGACCTCGATCTGAGGAACACCTCGGGGAGCTGGT 247989
Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393
||||| || | | || | || || ||| || || || || || |||
Sbjct 247988 GGGATACCGGAGAGTTCGAACTTGCCGAGCAGATTGTTGTCCTTGGTTCGGGCACGCTCA 247929
Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT- 517452
|||||||| | || || || | | || || || || | || | ||| |||
Sbjct 247928 CCCTCGAAGACCTGAATGAGGACACCTGGCTGGTTGTCAGAGAAGGTAGAGAATG-TCTC 247870
Query 517453 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG-GTCATAATACCACCTG 517511
||| || || || || || ||||||| | || | || | ||||| | ||| ||||
Sbjct 247869 GGACTTCTTGGTTGGGATGGTGGTGTTTCGCTTGATCA-ATGGAGTCATGACACCGCCTG 247811
Query 517512 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 517571
| || || | ||| | ||| || || | || || | || ||| || | | | ||
Sbjct 247810 CAGTCTCGATACCGATAGACAGTGGTGCAACGTCGAGCAG--CAAGATCTCGTTGGTTGA 247753
Query 517572 CATC-----AGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAG 517625
| || ||| | ||| |||||| |||| || || | |||||||| ||||| ||||
Sbjct 247752 CTTCGAAGAAGTATCTCCAGACAAGA-TAGCAGCCTGGACGGCAGCACCGTATGCGACAG 247694
Query 517626 CTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTT 517685
| ||||| || || | | | || | | || || ||||| |||| || | ||||
Sbjct 247693 CCTCATCGGGGTTGATCGACTTGTTGGGCTCCTTGCCGTTGAAGAAATCAGAGACGAGTT 247634
Query 517686 GTCTTACCT-TAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 517744
||| | | || || |||| || || ||||| || ||||| || || || ||
Sbjct 247633 -TCTGGATTCTTGGGATTCGAGTGGAACCACCAACCAAGACAATCTCGTGGACGGAAGAC 247575
Query 517745 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAG 517804
|| || | || | ||| | ||| ||||| || || | | ||| || | |
Sbjct 247574 TTGTCAATCTTGGCATCTCGGAGCACTCGCTCAACTGGCTCCATGGTGGATCTGAAAAGG 247515
Query 517805 TCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCG 517864
|| || | ||||| ||| |||| ||||| | | || | || || || ||
Sbjct 247514 TCCTGGCACAACTCTTCAAATCGGGCTCGAGTAATGGAGGTATAGAAGTCGATACCCTCA 247455
Query 517865 AACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGT 517924
| | || || | |||||| | || || | || || || || | || || || |||
Sbjct 247454 TATAGGGAGTCGATTTCAATAGATGTCTGTGCGGACGATGAGAGAGTTCGCTTGGCGCGT 247395
Query 517925 TCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAA-TCTGTTTTATA 517983
|| || || || | || | ||| | || ||| | | || || ||| | || |
Sbjct 247394 TCGCAAGCGGTTCGGAGACGTCGAAGAGCACGTGC-GTTGGAAGAAAGGTCTTTCTTGTG 247336
Query 517984 TTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCC 518043
||||||||||| || | ||| | | || || | || || || |||||||| ||
Sbjct 247335 CTTTCTCTTGAACTCGTTGACAAAGTGGTTGACGAGTCTGTTGTCGAAGTCTTCACCACC 247276
Query 518044 CAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAG 518103
||| | ||||| || | |||| | || | || | || ||||| | || ||| ||
Sbjct 247275 CAAGTGAGTATCACCGGCAGTAGACTTGACCTCAAAGATACCCTCTTCGATAGTCAACAG 247216
Query 518104 AGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG 518163
| ||||| ||| ||||| |||| ||||| || || || || || ||
Sbjct 247215 GGACACATCGAAGGTACCACCGCCCAAGTCAAAGATGAGGACGTTTCGCTCACCCTCAGT 247156
Query 518164 GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 518223
||||| || ||||| || || | ||||| || ||||| || || || || | | |||
Sbjct 247155 CTTTTTGTCGAGACCGTAGGCGATGGCAGCTGCGGTTGGCTCGTTGATGATCCGAAGAAC 247096
Query 518224 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 518283
|| | ||||| || || ||||| || ||||| ||||| || || || || || ||
Sbjct 247095 GTTCAAGCCAGCGATCAGACCAGCATCCTTGGTGGCCTGTCTCTGAGAGTCATTGAAGTA 247036
Query 518284 TGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTG 518343
||| || |||||||| || |||| | ||| ||||| || | ||| || |
Sbjct 247035 TGCTGGGACAGTAATGACAGCATTGTTGACTGTACCACCAAGGTATGATTCTGCAGTCTC 246976
Query 518344 TTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCA-T 518402
| ||| || | | || ||| ||||| || | |||||| | | | || ||||
Sbjct 246975 TCGCATCTTGGTAAGAACCATCGATGAGATCTCTTCTGGTGTAAAGGTTTTCTCTTCACC 246916
Query 518403 TTTGATATGATACTTCA-AAAT--ATGGTTTATTACCAACATTAATAACTTTAAATGGCC 518459
|||| || | || | || ||| || ||| | | || || || ||
Sbjct 246915 CTTGA----ATTCGACAGAGATCACTGGCTTGCCACCCTTGTCGAGGACCTTGAAGGGGA 246860
Query 518460 AGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 518519
||| |||||||||| |||||| | || || | | ||| || | |||||| |
Sbjct 246859 AGTGCTTCATATCTGCTTGAACTTCAGGATCGGCGAACTTGCGACCTATCAGTCGTTTCG 246800
Query 518520 CATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCA 518579
| || || | || |||| ||| || || || | || | || || | || || ||||
Sbjct 246799 CGTCGAAGACTGTGTTGGCTGGGTTCATGGCGACCTGGTTCTTTGCAGAGTCACCGATCA 246740
Query 518580 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 518639
| ||| || || || || | ||| | || || || || ||||| ||||| ||||| |
Sbjct 246739 GTCTTTCGGTGTCGGTGAAAGCGACAAAAGAGGGGGTAGTTCGATTGCCTTGGTCATTGG 246680
Query 518640 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAAT 518699
|||| ||||| | | | ||| | | | ||| || || | || || || ||||
Sbjct 246679 CAATGATTTCGATTCTGTCATCTCTGAAAATACCCACGCAGGAGTATGTGGTACCCAAAT 246620
Query 518700 CAATACCAATAGC 518712
||||||| || ||
Sbjct 246619 CAATACCGATTGC 246607
>seq47
Length=319710
Score = 93.3 bits (102), Expect = 3e-13
Identities = 141/200 (71%), Gaps = 3/200 (2%)
Strand=Plus/Plus
Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167
|||||| || |||||||||| |||| | || | ||||| || || ||||| ||
Sbjct 4376 ACATCAAAAGTACCACCACCCAAATCATAGATCATGACATTTCGCTCCTTCTCTTGCTTG 4435
Query 518168 TTAT---CAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
| | || || || || | ||| || ||||| || || || ||||| | | ||
Sbjct 4436 CCAGATCCGAGGCCGTAGGCGATAGCGGCCGCAGTGGGCTCGTTGATAATACGGAGGACG 4495
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
|||||||| || || ||| || ||||| |||||||||||||| ||||| || |||
Sbjct 4496 TTAAGACCGGCGATGGATCCGGCGTCTTTCGTGGCTTGTCTTTGATTGTCGTTGAAGTAT 4555
Query 518285 GCAGGAACAGTAATAACGGC 518304
|| ||||| || ||||||||
Sbjct 4556 GCTGGAACTGTGATAACGGC 4575
>seq12
Length=749661
Score = 89.7 bits (98), Expect = 4e-12
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 671660 GAATTTTTCTTCCAAGTAATGGCAGGTCGTGAAGGTATTATTAATACGGCTATTAAAACT 671719
|||||||||||||| | ||||| ||||| |||||| | ||| |||| ||| | || ||
Sbjct 276409 GAATTTTTCTTCCACGCCATGGCTGGTCGAGAAGGTCTGATTGATACAGCTGTCAAGACA 276350
Query 671720 GCTGATACTGGTTATATTCAAAGAAAACTTGTTAAAATGCTCGAAGA 671766
||||| |||||||| || || |||| |||||| ||| || |||||
Sbjct 276349 GCTGAGACTGGTTACATACAGAGAAGACTTGTCAAAGCTCTGGAAGA 276303
Score = 86.0 bits (94), Expect = 5e-11
Identities = 106/144 (74%), Gaps = 1/144 (1%)
Strand=Plus/Minus
Query 668849 TTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCT 668908
||||| || ||||||||||| | ||| ||| | ||||| ||||||||||| | ||
Sbjct 277866 TTAAG-GGCAAAGAAGGTCGACTGAGACAAAACCTAATGGGCAAACGTGTCGACTTCTCC 277808
Query 668909 GCACGTACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTT 668968
|| ||||| || |||||| ||||||||| | | ||| ||||||| || || |||| |
Sbjct 277807 GCCCGTACCGTCATTACTGGTGATCCCAACTTGTCCCTCGATGAAGTCGGCGTACCTCGT 277748
Query 668969 ATTATTGCTAAAAATCTTACTTTT 668992
| ||||| | || || || |||
Sbjct 277747 AGCATTGCCAGAACACTGACATTT 277724
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780811631745202
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |