Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq123 253 3e-62 seq85 156 5e-33 seq69 98.7 1e-15 >seq123 Length=109856 Score = 253 bits (280), Expect = 3e-62 Identities = 1134/1768 (64%), Gaps = 59/1768 (3%) Strand=Plus/Plus Query 111605 GGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGA 111664 ||||| |||||| ||||| | ||||| || | | || || ||||| |||||||| || Sbjct 47442 GGAAAGACCACAGCACATGCTGATGCGCGTGTCTGTTGGCATTCATGGAGAAGATATCGA 47501 Query 111665 TTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAAC 111724 || | ||||||||| | ||||||| ||||||| ||||| | || || Sbjct 47502 GAAGGTCATTGAGACATACAATCTCATGTCCCAGAAGATGTTCACACACGCTTCGCCCAC 47561 Query 111725 CCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAA 111784 ||||||||| || || ||||||| | |||||||| |||||| | || | | || Sbjct 47562 CCTCTTCAATGCAGGCACACCAAATGCTCAAATGTCATCATGTTTCTTGATCGACATGAA 47621 Query 111785 GGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTG 111844 |||||| || ||| | || || |||| || || | || ||| ||||||||| Sbjct 47622 GGAGGACTCGATCGAGGGAATCTACGATACGCTAAAGACCTGCGCCATGATCTCAAAGAA 47681 Query 111845 GGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAG-A 111902 || || ||||| || || || |||| | | |||| | | ||| ||| | | | Sbjct 47682 TGCCGGCGGTATTGGATTGAACGTCCACAAAATTCGAGCGA--CTGGCTCCTATATCGCA 47739 Query 111903 GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 111962 || ||||| || |||| | || || | || ||||| || || ||| || || || Sbjct 47740 GGCACAAACGGCACATCAAACGGCCTTGTCCCTATGCTCCGAGTCTTTGACAATACTGCT 47799 Query 111963 CGCTATGTAAACCAAGCTGGGCGTC-GCAAGGGATCT------ATCGCAGTCTATCTTGA 112015 || || || |||| ||||| | |||| || || | || || || ||||| Sbjct 47800 CGATACGTCGACCA----GGGCGGCAACAAGAGACCTGGTGCCTTTGCCGTTTACCTTGA 47855 Query 112016 GCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGA 112075 ||| |||||||| ||| || | |||| || | | || ||||| || | || || Sbjct 47856 GCCCTGGCACGCCGATGTCTTTGAGTGGCTGAACCTCCGGAAGAACCACGGAAAGGAAGA 47915 Query 112076 GGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 112134 | | |||| || ||| | || | ||||||||||| ||||||||| ||||||||| | | Sbjct 47916 AGTTC-GTGCTCGTGATTTGTTTTACGCTCTCTGGACTCCAGATCTGTTCATGAAGCGGG 47974 Query 112135 TTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATG 112194 ||||| | | || | ||| ||||||| || || || | || || ||| | || || Sbjct 47975 TTGAGAAAAACGGAGACTGGACTCTCTTCTGCCCCAACGAAGCTCCAGGTTTATCTGACT 48034 Query 112195 CCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTC--GGGCGAC 112252 | ||||||||||| || || || | | ||||| ||| | ||| | | || |||| Sbjct 48035 GCTACGGTGAGGAGTTCGAGGCTCTGTTCGAGAAGTATGAGAAGGAAGGCCGAGGCCGAC 48094 Query 112253 TGCGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 112311 ||| | | || | || | ||||| | || || | || | || || ||||||| Sbjct 48095 --AGACAAT-CAAGGCACAGAAGTTGTGGTATGCCATCTTGGAGGCCCAGACTGAGACTG 48151 Query 112312 GTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 112371 | | |||| ||||| ||||| |||||||| ||| ||| |||||||| ||||| |||| Sbjct 48152 GAAACCCATTCATGCTCTACAAGGACGCCTGCAACAGAAAAAGTAATCAGAAGAACTTGG 48211 Query 112372 GTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGA 112431 | |||||| |||||| | || ||||||||| | || | || | | || ||| Sbjct 48212 GCACCATCAAGTCCTCCAACTTGTGCACAGAAATCATTGAGTACACCGCCCCTGACGAGG 48271 Query 112432 CGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG- 112490 || || || || | || || | ||| | || | || || ||| || | ||| Sbjct 48272 TCGCCGTCTGCAATTTGGCTTCTGTTGCTTTGCCATCTTTCGTTGA-CCA-AGTCGAAGG 48329 Query 112491 -ACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAG 112549 || ||| | || ||| ||||| || | | | || || ||||| |||| Sbjct 48330 TCAATATGACTTTGGCCGACTGCACGAGGTCATCCAGGTCATGACTAAGAACCTGAACAA 48389 Query 112550 AGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCG 112609 | || || | || | |||||||| | || | || || | |||||||| Sbjct 48390 GATCATCGAGATCAACTACTACCCCGTCCCGGAAGCGAGAAAGAGCAACTTCAGACACCG 48449 Query 112610 TCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT---CTTTGTCGCCACGC 112666 || |||||||| ||||| ||||| || || |||| ||| || ||| | | | | Sbjct 48450 ACCCATTGGTCTTGGTGTTCAAGGCCTTGCTGATGCTTTCCTTGCCCTTAGACTGC---C 48506 Query 112667 ATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGC 112726 || ||||| |||||| | | |||| | ||||| ||||| || || ||||| Sbjct 48507 GTTCGATTCTCCCGAAGCAAGACAGCTCAACATTCAAATATTCGAGACTATCTACCACGC 48566 Query 112727 CGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGG 112786 ||||| || | || | || ||| ||||||||| ||||||| |||||| Sbjct 48567 AGCTCTGACAGCTTCATGTGACCTTGCGAAGGAACTTGGTCCATACGAAACCTATGAGGG 48626 Query 112787 TTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCA----AGC 112842 || || ||| ||||| ||| || | || | |||| ||| |||| | | Sbjct 48627 CTCGCCCATTTCTCAAGGTCAGCTACAGTACGACCTCTGGG-GTCTGACACCAACAGACC 48685 Query 112843 TTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTC 112902 || | |||||||| || | || | || || | ||| |||| || || Sbjct 48686 TT---TGGGACTGGGAGGCCTTGAAAGCCAAGATTGCTCAGTATGGTGTTCGAAATTCTC 48742 Query 112903 TTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCT 112962 || | | ||||| ||||| || ||||| || | || || ||||| ||||||||||||| Sbjct 48743 TTCTTGTCGCACCCATGCCGACCGCCTCTACGTCGCAGATATTGGGCAATAATGAATGCT 48802 Query 112963 TTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTG 113022 | || || || || | |||||||| | | | || || || ||| | | | Sbjct 48803 TCGAGCCATATACATCCAACATCTACTCCCGTCGTGTGTTAGCAGGCGAATTTCAGGTCG 48862 Query 113023 TCAA--CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAA 113080 |||| || | || | | || ||| || |||| || ||||| | | ||||| Sbjct 48863 TCAATCCATG--GCTGCTCAAAGATCTCGTTGATCTTGGCCTGTGGTCGGACAACATGAA 48920 Query 113081 GGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAAT 113140 | | || | | ||| ||||| ||||| || | | |||||| || || Sbjct 48921 GAACAGAATCATTGCCGAGGGCGGTTCAATTCAGAACGTACCAAACATTCCAACCGACAT 48980 Query 113141 TAAGAAGTTGTACCGCACAGTTTGGGAAATC---AAGATGAAGGATGTCATTGACATGGC 113197 || | ||| || || ||||| ||| ||| ||| | |||| | ||||| Sbjct 48981 CAAAGCACTCTACAAGACTGTCTGGGAGATCTCTCAGA-GAA--CTATCATCCAGATGGC 49037 Query 113198 CGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAG- 113254 ||| ||||| ||| ||||||||||| ||||| ||| |||| |||||| ||| Sbjct 49038 CGCTGATCGAGGTGCCTTCATTGATC--AGTCACAGTCGTTGAA--CATTCATCTGAAGG 49093 Query 113255 -TCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAA 113313 ||||| ||| |||| || ||||||||||| | | ||||| | ||||||||| | Sbjct 49094 AACCAACCATGGGCAAGATCACTTCTATGCACTTCGCTGGCTGGAAAATGGGTCTCAAGA 49153 Query 113314 CGGGGATGTATTACCTCCGATCTAAGGC 113341 | || ||||| || || ||| | | ||| Sbjct 49154 CTGGCATGTACTATCTTCGAACCATGGC 49181 >seq85 Length=245923 Score = 156 bits (172), Expect = 5e-33 Identities = 183/246 (74%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 102090 CTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 102149 ||||| || |||||| | ||| |||| || ||| ||||||||| || |||||| | Sbjct 84686 CTCTTCGACGCCATCGATACAATTCCTTGCATTAGAAAGAAAGCTGAATGGGCTCTCCGC 84627 Query 102150 TGGTTT---GATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTT 102206 ||| || ||| | |||| ||||||| |||| || |||| ||||| ||| Sbjct 84626 TGGATTTCAGATCGAGAGTCCA---CCTTTGCCCAGCGTCTGGTCGCCTTTGCCGCTGTG 84570 Query 102207 GAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTC 102266 || |||||||||||||| || |||||| | | || | ||||||||||||||||||||| Sbjct 84569 GAAGGTATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTC 84510 Query 102267 ATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAG 102326 ||||| || || |||||||||||| |||||||| || |||||||| | ||| || Sbjct 84509 ATGCCCGGCCTTACCTTCTCCAACGAACTTATCTCCCGGGACGAGGGCATGCACACCGAC 84450 Query 102327 TTTGCG 102332 |||||| Sbjct 84449 TTTGCG 84444 >seq69 Length=644404 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 163547 TATGGGCGTGTTGCGCCACGATCTGGTCTCGCTGTGAAA-CACGGTATCCAAGTTGGTGC 163605 ||||||||||| || ||||| || || ||||| || ||| || ||| | || || Sbjct 381192 TATGGGCGTGTAGCTCCACGCTCAGGACTCGC-GTCAAAGCATTTCATCGACACAGGCGC 381134 Query 163606 GGGTGTTATTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTCTTCAA--TCATGGA 163663 ||||| |||||| ||||||||| || ||||||||||| | | ||||| ||| | Sbjct 381133 AGGTGTGATTGATGCCGACTACAGAGGAGAAGTCAAAGTATTGTTGTTCAACTTCA--GT 381076 Query 163664 GACAAAGACTTTGAGGTAAAGAGGGGGGAGCGCATCGCACAACTTGTTCTTGAGAGGTGT 163723 |||| |||| |||||| ||| ||| || || ||||||||| | || ||||| ||| | Sbjct 381075 GACACCGACTATGAGGTGAAGCAGGGAGAACGAATCGCACAATTAGTCCTTGAAAGGATT 381016 Query 163724 GAGACACCCGATGT 163737 | ||||| || || Sbjct 381015 GTCACACCTGAGGT 381002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620740716236240