Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq123 167 3e-36 seq85 138 1e-27 >seq123 Length=109856 Score = 167 bits (184), Expect = 3e-36 Identities = 521/796 (65%), Gaps = 17/796 (2%) Strand=Plus/Minus Query 110286 AGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTC 110345 ||||| ||| || | |||||| || | |||||| | ||||||| || | ||||| Sbjct 48300 AGCAACAGAAGCCAAATTGCAGACGGCGACCTCGTCAGGGGCGGTGTACTCAATGATTTC 48241 Query 110346 CGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCA 110405 || ||||||||||| ||| ||| ||||||||||||||||| ||| |||||| Sbjct 48240 TGTGCACAAGTTGGAGGACTTGATGGTGCCCAAGTTCTTCTGATTACTTTTTCTGTTGCA 48181 Query 110406 TGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTT 110465 || ||||| ||||||||| ||||| | ||||| || ||||| | || | ||||| | Sbjct 48180 GGCGTCCTTGTAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTCCAAGATGGCATA 48121 Query 110466 CCA-TACATCGGCGGCGGGGACAGTTGCGTTAG-CGAGACCTTCCTCCTCGTACTTGGTG 110523 ||| || || | || || | | || | | | ||||||| ||| ||||| | Sbjct 48120 CCACAACTTCTG-TGCCTTGATTG-TCTGTCGGCCTCGGCCTTCCTTCTCATACTTCTCG 48063 Query 110524 TACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAG 110583 ||| |||| || |||| ||||| ||||| | ||| || | || ||| ||| Sbjct 48062 AACAGAGCCTCGAACTCCTCACCGTAGCAGTCAGATAAACCTGGAGCTTCGTTGGGGCAG 48003 Query 110584 AAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATC 110643 ||||| | ||| | ||| | |||||||| |||||||||||| || ||| |||| | Sbjct 48002 AAGAGAGTCCAGTCTCCGTTTTTCTCAACCCGCTTCATGAACAGATCTGGAGTCCAGAGA 47943 Query 110644 GCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAA 110703 || | || | ||||| |||| | ||||| | || ||||| || || | || Sbjct 47942 GCGTAAAACAAATCACGAGCACGAACTTCTTCCTTTCCGTGGTTCTTCCGGAGGTTCAGC 47883 Query 110704 AAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCC----CTTACG 110759 | || | || ||| | |||||| || || || || || || | || || || | Sbjct 47882 CACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAACGGCAAAGGCACCAGGTCTCTTG 47823 Query 110760 ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTG---AAGACCCTGAGCATAGGAAT 110816 | || |||||| || || || || || |||| ||||| | ||||||||| | Sbjct 47822 TTG-CCGCCCTGGTCGACGTATCGAGCAGT---ATTGTCAAAGACTCGGAGCATAGGGAC 47767 Query 110817 AATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTG 110876 || || | ||| || ||||| || || ||| | | || ||||| | ||| Sbjct 47766 AAGGCCGTTTGATGTGCCGTTTGTGCCTGCGATATAGGAGCCAGTCGCTCGAATTTTGTG 47707 Query 110877 GATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTAC 110935 || | || |||||||| || || ||| || || || ||| | || ||| Sbjct 47706 GACGTTCAATCCAATACCGCCGGCATTCTTTGAGATCATGGCGCAGGTCT-TTAGCGTAT 47648 Query 110936 CATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAG 110995 | || || || || ||||| || |||| || | || | || || || ||||| |||| Sbjct 47647 CGTAGATTCCCTCGATCGAGTCCTCCTTCATGTCGATCAAGAAACATGATGACATTTGAG 47588 Query 110996 GACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACA 111055 | || || || ||||||||||| || || | || || |||||| ||||||| Sbjct 47587 CATTTGGTGTGCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGTGAACATCTTCTGGGACA 47528 Query 111056 TCTTGTTGTATGTGTC 111071 | |||||||| || Sbjct 47527 TGAGATTGTATGTCTC 47512 >seq85 Length=245923 Score = 138 bits (152), Expect = 1e-27 Identities = 532/814 (65%), Gaps = 20/814 (2%) Strand=Plus/Plus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 ||||||||||| | ||| ||||||||||| ||||| || | || |||||||| |||||| Sbjct 84157 TAGTCACCCACTCGCTTCTCGAAGAAATTGGTCTTGCCCGCTAGAGAGATGTTCTCCATA 84216 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAG-ATTGGTGGTTGACCA-ACTTGTTTCAGAAGAC 119325 |||||||| ||||| || || || | | |||| ||| ||| | || || | Sbjct 84217 AAGTCAAACGGATTGGTGACCTTGTAGTACTTCGGGTTACCCATACT--TACCAACAGCC 84274 Query 119326 GATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTAC 119385 | |||| || |||| || || | ||| | ||| ||||| || | ||| | Sbjct 84275 GGTCGGCAACGAACTCAATGTACTGCTTCATGAGCTTCGAGTTCATGCCCAGTAGAGCAA 84334 Query 119386 ACGGGAGAGCATCGAGGATGAAGTTCTT-CTCGATCTCCACAGCTTCTTTCACGATGGAG 119444 ||||| || ||| || ||| ||||| |||||||| || || || | ||||| Sbjct 84335 CGGGGAGCGCCTCGGTGAGGAA-TTCTTGCTCGATCTGGACGGCCTCGACGATGATGGCC 84393 Query 119445 TGAATAGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAAATTCT 119504 || ||| ||| | || || || | | | | | || | ||||| || Sbjct 84394 TGGATAAGTTCCTTTGAGGGGCGGTGGTTAAGGTGCGAGAGCAGCAGGCACGCAAAGTCG 84453 Query 119505 TGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGT 119564 || | || || ||||| ||||| || || || |||| ||| || |||||||| Sbjct 84454 GTGTGCATGCCCTCGTCCCGGGAGATAAGTTCGTTGGAGAAGGTAAGGCCGGGCATGAGA 84513 Query 119565 CCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACA 119624 |||| ||||| ||||| ||||||| || || || |||||||| || |||||| Sbjct 84514 CCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATACCTTCCACA 84573 Query 119625 CAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTG-TC-GAA--CCACTTGAG 119680 ||| || |||| ||||||| || |||||| || || | || ||| ||| ||| Sbjct 84574 GCGGCAAAGGCGACCAGACGCTGGGC-AAAGGTGGACTCTCGATCTGAAATCCAGCGGAG 84632 Query 119681 AGCCCAGTTGGCCTTACGCTCT-ATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCT 119739 |||||| || ||| | ||| ||||| || | || | |||||| ||||| || | | Sbjct 84633 AGCCCA-TTCAGCTTTCTTTCTAATGCAAGGAATTGTATCGATGGCGTCGAAGAGGTATT 84691 Query 119740 -TCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGA 119798 ||||| | | || ||||| ||| | |||||||| ||||| | || | || Sbjct 84692 GTCTTTGCTTTGGC-TCTTTAATGTATGTGTCAATGAGAAGTGAGTACATTTCGCTGTGG 84750 Query 119799 ACCATTT-CATTGTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTC 119857 | ||| ||| || ||| || ||||||| |||| ||||||| | ||| ||||| Sbjct 84751 ATGTTTTCCATCATG-ATCTGGAAGCCATAAAAGCAGCGGGCTTCGGGGACTTGGACTTC 84809 Query 119858 GTCAGCAAAATTGTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGC 119917 | | | || | | | || || || || || || || | |||||||| || Sbjct 84810 GCCGGAGAAGCGCTCGACAAGGTTCTCGTTGACGATGCCGTCCGAGGCGGCGAAGAAAGC 84869 Query 119918 TAAGATGTACTTTATGAATTTCTGTTCATTATCGTTGAG--TGT-TTTCCAGTCGTCCAT 119974 | || || | ||| | |||| | ||||||||| ||| | |||||||| | Sbjct 84870 GAGGACGTGGGAAACGAAGTAACGTTCGTCATCGTTGAGCTTGTGGTGCCAGTCGTGGAG 84929 Query 119975 ATCTTTAGACAAGTCCACCTCTTCAGCTGTCCAG 120008 |||||| |||| ||| || ||||| || |||||| Sbjct 84930 ATCTTTCGACAGGTCGACTTCTTCGGCGGTCCAG 84963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588974402402600