Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq123 286 4e-72 seq85 145 9e-30 seq69 95.1 1e-14 >seq123 Length=109856 Score = 286 bits (316), Expect = 4e-72 Identities = 1142/1772 (64%), Gaps = 67/1772 (4%) Strand=Plus/Minus Query 105581 GCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGC 105640 ||| | | ||| ||||||||||| || |||||||| || |||||| | | ||| Sbjct 49181 GCCATGGTTCGAAGATAGTACATGCCAGTCTTGAGACCCATTTTCCAGCCAGCGAAGTGC 49122 Query 105641 ATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAAAGA---TTCAT--ACTTTGAC 105695 ||||||| || |||| ||| ||||| |||| | | | || |||| ||| |||| Sbjct 49121 ATAGAAGTGATCTTGCCCATGGTTGG---TTCCTTCAGATGAATGTTCAACGACTGTGAC 49065 Query 105696 TCTGGTCAATGAAGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTT---GA 105752 | | ||||||||| ||| || | || ||||| | |||| | ||| ||| || Sbjct 49064 T--GATCAATGAAGGCACCTCGATCAGCGGCCATCTGGATGATAG--TTC-TCTGAGAGA 49010 Query 105753 TTTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAA 105812 | ||||| || || |||||| ||||| || ||| || | || | || |||| Sbjct 49009 TCTCCCAGACAGTCTTGTAGAGTGCTTTGATGTCGGTTGGAATGTTTGGTACGTTCTGAA 48950 Query 105813 TTGAACCCCCCGCCTTGACCATGAGA---TCCTTCATATCCTTGGACCAAAGACCAATCT 105869 ||||||| ||| | | | |||| | |||||| | | ||||| || |||| | Sbjct 48949 TTGAACCGCCCTC---GGCAATGATTCTGTTCTTCATGTTGTCCGACCACAGGCCAAGAT 48893 Query 105870 TCTTGAGATCATTGACGAGATGCTTG--TTGACAATCACAAACTCTCCCGCGAGGGTTCT 105927 |||||| |||| || | || ||||| | | ||| || || || | | Sbjct 48892 CAACGAGATCTTTGAGCAGC--CATGGATTGACGACCTGAAATTCGCCTGCTAACACACG 48835 Query 105928 TCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGC 105987 | |||||||| | || || || || |||||||||||||| ||||| || || | Sbjct 48834 ACGGGAGTAGATGTTGGATGTATATGGCTCGAAGCATTCATTATTGCCCAATATCTGCGA 48775 Query 105988 GGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGAT 106047 || ||||| || ||||| ||||| | | |||| || |||| ||| | | || Sbjct 48774 CGTAGAGGCGGTCGGCATGGGTGCGACAAGAAGAGAATTTCGAACACCATACTGAGCAAT 48715 Query 106048 GCGTTCCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATATCA 106105 | || | | |||||||| | | | | ||||| ||| |||| | || Sbjct 48714 CTTGGCTTTCAAGGCCTCCCAGTCCCAAAGGTCTG-TTGGTGTCAGAC-CCCAGAGGTCG 48657 Query 106106 AATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCT 106165 | || ||| ||||| || |||| || |||||| | || || || | ||| | | Sbjct 48656 TACTGTAGCTGACCTTGAGAAATGGGCGAGCCCTCATAGGTTTCGTATGGACCAAGTTCC 48597 Query 106166 TCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCA 106225 | || | ||||| || ||| | |||||| || || || || || || || Sbjct 48596 TTCGCAAGGTCACATGAAGCTGTCAGAGCTGCGTGGTAGATAGTCTCGAATATTTGAATG 48537 Query 106226 TTCATCTCCTTGGCTTCATCTGAATCAAATGCG----TAGCGGCACAAAATAAATACATC 106281 || | || | ||||| ||||| || | || |||| | || |||| Sbjct 48536 TTGAGCTGTCTTGCTTCGGGAGAATCGAACGGCAGTCTAAGGGCA----AGGAAAGCATC 48481 Query 106282 CGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGT 106341 || || ||||||||||| | |||||| |||| ||||| | || ||||| ||| Sbjct 48480 AGCAAGGCCTTGAACACCAAGACCAATGGGTCGGTGTCTGAAGTTGCTCTTTCTCGCTTC 48421 Query 106342 CTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT 106401 | ||||| || | || | || |||| ||| || || || || | | || | Sbjct 48420 CGGGACGGGGTAGTAGTTGATCTCGATGATCTTGTTCAGGTTCTTAGTCATGACCTGGAT 48361 Query 106402 GATTTCATGAAGTTTTTCATAATCAAAAG----TGCGAGTCTCTTCATTGACATACTTTG 106457 || || || ||| || | ||| | | ||| | | ||| || | | || Sbjct 48360 GACCTCGTGCAGTCGGCCAAAGTCATATTGACCTTCGACT-TGGTCAACGAAAGA---TG 48305 Query 106458 GAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAA 106517 | | || | || ||||||||||| || || ||| || | |||||||| | | Sbjct 48304 GCAAAGCAACAGAAGCCAAATTGCAGACGGCGACCTCGTCAGGGGCGGTGTACTCAATGA 48245 Query 106518 TTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGT 106577 ||||||| ||||||||||| ||| || || ||||| ||||| || ||||| ||| ||| Sbjct 48244 TTTCTGTGCACAAGTTGGAGGACTTGATGGTGCCCAAGTTCTTCTGATTACTTTTTCTGT 48185 Query 106578 TGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTG 106637 |||| || ||||||||||||||| | || | || ||||| ||||| | || | || | Sbjct 48184 TGCAGGCGTCCTTGTAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTCCAAGATGG 48125 Query 106638 CCTTCCACA-CATCGGCGGCTGGTACAATGGC-GTTGGCC-CGTCCCTCCGCCTCGTACT 106694 | | ||||| | || | | || | | || | || |||| || || ||| ||| |||| Sbjct 48124 CATACCACAACTTCTGTGCCTTG---ATTGTCTGTCGGCCTCGGCCTTCCTTCTCATACT 48068 Query 106695 TTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTG 106754 | | | || || || ||||||||||| ||| || | |||||| || | || | Sbjct 48067 TCTCGAACAGAGCCTCGAACTCCTCACCGTAGCAGTCAGATAAACCTGGAGCTTCGTTGG 48008 Query 106755 GACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 106814 | ||||| |||| ||| | || | |||||||||||||||||| || |||||| ||| Sbjct 48007 GGCAGAAGAGAGTCCAGTCTCCGTTTTTCTCAACCCGCTTCATGAACAGATCTGGAGTCC 47948 Query 106815 ACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACT 106874 | || | |||| | ||| | | ||| | ||||| | || ||||| || | | Sbjct 47947 AGAGAGCGTAAAACAAATCACGAGCACGAACTTCTTCCTTTCCGTGGTTCTTCCGGAGGT 47888 Query 106875 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGAT------AGATC 106928 || |||| | || ||| |||||||| |||||||| || || || | || || Sbjct 47887 TCAGCCACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAACGGCAAAGGCACCAGGTC 47828 Query 106929 CCTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 106987 ||| | | ||||| | | || | || || || || || ||| || || ||||| Sbjct 47827 TCTTGTTGCCGCCCTGGTCGA----CGTATCGAGCAGTATTGTCAAAGACTCGGAGCATA 47772 Query 106988 GGAATAATACCATCTGATTGACCATTTGTCCCC-CGA-ATACGAGATTTATTGGCTCTCA 107045 || | || || | |||| || ||||| || ||| ||| ||| | | |||| | Sbjct 47771 GGGACAAGGCCGTTTGATGTGCCGTTTGTGCCTGCGATATAGGAGCC--AGTCGCTCGAA 47714 Query 107046 CATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAA 107105 | |||| || || |||||||| || || ||||||||| || || | | | Sbjct 47713 TTTTGTGGACGTTCAATCCAATACCGCCGGCATTCTTTGAGATCATGGCGCAGGTCTTTA 47654 Query 107106 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 107165 | || | ||||| || | ||| ||||||||||| || |||| | ||| || |||| Sbjct 47653 GCGTATCGTAGATTCCCTCGATCGAGTCCTCCTTCATGTCGATCAAGAAACATGATGACA 47594 Query 107166 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTT 107225 | || | ||||||| || |||||||||||||| || | ||||| ||||||| | Sbjct 47593 TTTGAGCATTTGGTGTGCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGTGAACATCTTCT 47534 Query 107226 GGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGG 107285 ||||||| | ||||||||| | ||| || || ||||| || || ||||| | | Sbjct 47533 GGGACATGAGATTGTATGTCTCAATGACCTTCTCGATATCTTCTCCATGAATGCCAACAG 47474 Query 107286 CCACACGCATAAACATGTATTGGGGTGTTTCC 107317 ||| ||||| | ||||| || ||| ||||| Sbjct 47473 ACACGCGCATCAGCATGTGCTGTGGTCTTTCC 47442 >seq85 Length=245923 Score = 145 bits (160), Expect = 9e-30 Identities = 307/453 (68%), Gaps = 10/453 (2%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| || ||||||||||| ||||| |||||||| || | || ||||| |||||| Sbjct 84157 TAGTCACCCACTCGCTTCTCGAAGAAATTGGTCTTGCCCGCTAGAGAGATGTTCTCCATA 84216 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCA--AATGGGTGGCACCCCAACTTGTTTGAGGAGAC 117103 |||||||| ||||| | | || | | | | | |||| |||| | || | Sbjct 84217 AAGTCAAACGGATTGGTGACCTTGTAGTACTTCGGGTTACCCATACTTACC--AACAGCC 84274 Query 117104 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTAC 117163 | || | || |||||||||||| ||| || |||||||| || | ||| | Sbjct 84275 GGTCGGCAACGAACTCAATGTACTGCTTCATGAGCTTCGAGTTCATGCCCAGTAGAGCAA 84334 Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 ||||| || || || ||| ||| ||| |||| || ||||| | |||||| | Sbjct 84335 CGGGGAGCGCCTCGGTGAGGAATTCTTGCTCGATCTGGACGGCCTCGACGATGATGGCCT 84394 Query 117224 GGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG---GCAAACT 117280 ||||| ||| | | ||| | | | ||| || |||| || | ||||| | Sbjct 84395 GGATAAGTTCCTTTGAGGGGCGGTG--GTTAAGGTGCGA-GAGCAGCAGGCACGCAAAGT 84451 Query 117281 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGA 117340 | ||| | ||||| || ||||| |||||||| || |||||| ||||| ||||||| Sbjct 84452 CGGTGTGCATGCCCTCGTCCCGGGAGATAAGTTCGTTGGAGAAGGTAAGGCCGGGCATGA 84511 Query 117341 GACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCA 117400 |||| |||||||| | ||| | || | | ||| || ||||||||||||||||| |||| Sbjct 84512 GACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATACCTTCCA 84571 Query 117401 CACACGCAAACGCAAAAAGGCGCTCGGCGAAGG 117433 || ||||| || | || |||| ||| |||| Sbjct 84572 CAGCGGCAAAGGCGACCAGACGCTGGGCAAAGG 84604 >seq69 Length=644404 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 155044 TATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCG 155103 ||||| ||||| || ||||| || || ||||| |||||| || | || || Sbjct 381192 TATGGGCGTGTAGCTCCACGCTCAGGACTCGCGTCAAAGCATTTCATCGACACAGGCGCA 381133 Query 155104 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 155163 ||||| |||||| ||||||| | ||| ||||||||||| | | ||||| | | ||| Sbjct 381132 GGTGTGATTGATGCCGACTACAGAGGAGAAGTCAAAGTATTGTTGTTCAACTTCAGTGAC 381073 Query 155164 AAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGA 155213 | |||| |||||| ||| | || || || ||||||||| | |||||||| Sbjct 381072 ACCGACTATGAGGTGAAGCAGGGAGAACGAATCGCACAATTAGTCCTTGA 381023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979199677080