Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1 104 3e-17 >seq1 Length=402072 Score = 104 bits (114), Expect = 3e-17 Identities = 186/272 (68%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 || ||||||||| | || | ||||| ||||| ||||||||||| || || || | Sbjct 149325 CAGAGGTTTGGTGTGCCGCTCGGATACGGAGGACCTCATGCTGCCTTTTTCGCCTGCAGT 149266 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGT 153887 || || |||||||||| || ||||| | | || ||| ||| ||| | ||| Sbjct 149265 GAACAGCATAAGAGAAAAATCCCTGGACGGCTCGTTGGTGTTTCAAAAGACCGACTAGGA 149206 Query 153888 AATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCA 153947 || ||||| | || | || | || ||| | |||||||| ||| | | || || || Sbjct 149205 AACAAAGCTGTCCGACTTGCGTTGCAAACTCGGGAGCAGCACATCCGTCGCGAAAAGGCT 149146 Query 153948 ACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCA 154007 || |||||||||||| ||||| || ||||| || || ||| | | ||||||| Sbjct 149145 ACTTCTAACATCTGCACCGCTCAAGCTCTGCTTGCCAACATGGCAGCGCTCTATGCGATC 149086 Query 154008 TATCATGGTGCAGATGGACTACATGCTATAGC 154039 || || ||| ||| ||||| || ||||| || Sbjct 149085 TACCACGGTCCAGGGGGACTGCAAGCTATTGC 149054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579211228885280