Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1 116 4e-21 >seq1 Length=402072 Score = 116 bits (128), Expect = 4e-21 Identities = 202/294 (69%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 158421 TGACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCA 158480 |||||| ||| | || || || ||||||||| | || | ||||||||||| ||||| Sbjct 149347 TGACATCGCTTTTGGAAGCGCTCAGAGGTTTGGTGTGCCGCTCGGATACGGAGGACCTCA 149288 Query 158481 TGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGG 158540 |||||| || || || | || || |||||||||| || ||||| | | || || Sbjct 149287 TGCTGCCTTTTTCGCCTGCAGTGAACAGCATAAGAGAAAAATCCCTGGACGGCTCGTTGG 149228 Query 158541 TCAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCA 158600 | ||| ||| | ||| || ||||| | || | || | || ||| | ||||| Sbjct 149227 TGTTTCAAAAGACCGACTAGGAAACAAAGCTGTCCGACTTGCGTTGCAAACTCGGGAGCA 149168 Query 158601 GCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAA 158660 ||| ||| | | || || || || |||||||||||| || ||||| ||||| || || Sbjct 149167 GCACATCCGTCGCGAAAAGGCTACTTCTAACATCTGCACCGCTCAAGCTCTGCTTGCCAA 149108 Query 158661 TATGTCTGGGTTCTATGCAGCATATCATGGTGCAGATGGACTACATGCTATAGC 158714 ||| | | | ||||||| || || ||| ||| ||||| || ||||| || Sbjct 149107 CATGGCAGCGCTCTATGCGATCTACCACGGTCCAGGGGGACTGCAAGCTATTGC 149054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588049604911120