Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq154 163 6e-35
>seq154
Length=71981
Score = 163 bits (180), Expect = 6e-35
Identities = 168/217 (77%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCC 194983
||||| |||||||| || || |||||||| ||||| |||||||| | |||| |||| |
Sbjct 41461 TCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGACAAG-GTTCGAC 41403
Query 194984 CATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTT 195043
|||| || ||||| || ||||||||||| | || || |||||||| ||||| ||||| |
Sbjct 41402 CATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGGAATACCTTCCT 41343
Query 195044 TGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAA 195103
||||||| ||||| ||| ||||| || ||||| || || ||||||||| || || |
Sbjct 41342 TGTCTTGGATTTTCGACTTAACGTTATCGATGGTATCAGATGATTCCACTTCGAGTGTTA 41283
Query 195104 CCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || ||||| | |||||| || || | ||||||
Sbjct 41282 TGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCAT 41246
Score = 143 bits (158), Expect = 6e-29
Identities = 165/217 (76%), Gaps = 10/217 (5%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995
||| || || || ||||| ||||| ||||| ||| |||| || | || ||||| ||||
Sbjct 40993 GTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAG-GTGCGACCGTCTTCAAGCT 40935
Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055
||||||| ||||| || || ||||| ||||| ||||||||||| || ||||||||||| |
Sbjct 40934 GCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGAATCT 40875
Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTC 195112
| |||||| || || || ||||| ||| ||| || |||||||| | ||||| |
Sbjct 40874 TGCTCTTGACATTGTCGATCGTGTC---ACTGGATTCGACCTCAAGGGTGATGGTCTTGC 40818
Query 195113 CTGTCAAAGTTTTTACGAACACTTGCATTT--ATGGT 195147
| |||| ||| || ||||| | ||||||| |||||
Sbjct 40817 CAGTCAGAGTCTTGACGAAGATCTGCATTTTGATGGT 40781
Score = 132 bits (146), Expect = 1e-25
Identities = 160/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||| | ||| ||||||||||| || || || || ||||||||||| | |||||
Sbjct 41235 AGTCGTAGAACTAGGTGAAGAGTCGATTCCTTCTGGATATTGTAATCACTCAAAGTTCGG 41176
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|| ||||| || |||||||| || ||||| ||||| || ||||| |||||||| || ||
Sbjct 41175 CCGTCTTCCAGTTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGGGAGGAATACCCTCC 41116
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
|| || || ||||| |||||| || || ||||| || ||| || || || || ||
Sbjct 41115 TTATCCTGGATTTTGCTCTTGACATTGTCGATGGTATCGGAAGACTCAACCTCGAGAGTG 41056
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| ||||| || ||||| || || || || | |||||
Sbjct 41055 ATTGTCTTACCAGTCAATGTCTTCACAAAAATCTGCAT 41018
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109478515294439
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |