Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq154 163 6e-35 >seq154 Length=71981 Score = 163 bits (180), Expect = 6e-35 Identities = 168/217 (77%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCC 194983 ||||| |||||||| || || |||||||| ||||| |||||||| | |||| |||| | Sbjct 41461 TCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGACAAG-GTTCGAC 41403 Query 194984 CATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTT 195043 |||| || ||||| || ||||||||||| | || || |||||||| ||||| ||||| | Sbjct 41402 CATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGGAATACCTTCCT 41343 Query 195044 TGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAA 195103 ||||||| ||||| ||| ||||| || ||||| || || ||||||||| || || | Sbjct 41342 TGTCTTGGATTTTCGACTTAACGTTATCGATGGTATCAGATGATTCCACTTCGAGTGTTA 41283 Query 195104 CCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||||| | |||||| || || | |||||| Sbjct 41282 TGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCAT 41246 Score = 143 bits (158), Expect = 6e-29 Identities = 165/217 (76%), Gaps = 10/217 (5%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 ||| || || || ||||| ||||| ||||| ||| |||| || | || ||||| |||| Sbjct 40993 GTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAG-GTGCGACCGTCTTCAAGCT 40935 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 ||||||| ||||| || || ||||| ||||| ||||||||||| || ||||||||||| | Sbjct 40934 GCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGAATCT 40875 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTC 195112 | |||||| || || || ||||| ||| ||| || |||||||| | ||||| | Sbjct 40874 TGCTCTTGACATTGTCGATCGTGTC---ACTGGATTCGACCTCAAGGGTGATGGTCTTGC 40818 Query 195113 CTGTCAAAGTTTTTACGAACACTTGCATTT--ATGGT 195147 | |||| ||| || ||||| | ||||||| ||||| Sbjct 40817 CAGTCAGAGTCTTGACGAAGATCTGCATTTTGATGGT 40781 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| | ||| ||||||||||| || || || || ||||||||||| | ||||| Sbjct 41235 AGTCGTAGAACTAGGTGAAGAGTCGATTCCTTCTGGATATTGTAATCACTCAAAGTTCGG 41176 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| || |||||||| || ||||| ||||| || ||||| |||||||| || || Sbjct 41175 CCGTCTTCCAGTTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGGGAGGAATACCCTCC 41116 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || ||||| |||||| || || ||||| || ||| || || || || || Sbjct 41115 TTATCCTGGATTTTGCTCTTGACATTGTCGATGGTATCGGAAGACTCAACCTCGAGAGTG 41056 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || ||||| || || || || | ||||| Sbjct 41055 ATTGTCTTACCAGTCAATGTCTTCACAAAAATCTGCAT 41018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109478515294439