Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq154 109 4e-19
seq102 93.3 3e-14
>seq154
Length=71981
Score = 109 bits (120), Expect = 4e-19
Identities = 154/214 (72%), Gaps = 8/214 (4%)
Strand=Plus/Minus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||||||||| | ||| || || ||||||||||| || || ||||| | || | || ||
Sbjct 41683 AACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCAGAAAGAGTACGACCGTCCTC 41624
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
|| || ||||||||||| || ||||||||||| || |||| | |||||||||||
Sbjct 41623 CAATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGCGGAATACCCTCCTTGTCCTG 41564
Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947
||||| || || || | ||||| ||| | |||||| || | ||| || |
Sbjct 41563 GATCTTGGACTTTAC--AT--TGTCGATAGTGTCAGAGCTCTCAACCTCCAAGGTAATTG 41508
Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || || ||||| |||||||| || || |||||
Sbjct 41507 TCTTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 41474
Score = 107 bits (118), Expect = 1e-18
Identities = 153/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATC 34831
|||||||| | || ||||||||||||||| ||||| | |||| | || | || ||
Sbjct 40998 ACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAGG-TGCGACCGTCTTC 40940
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
||||| || || || || || || ||||||||||| | || | |||||||||||
Sbjct 40939 AAGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTG 40880
Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951
|||||| ||||| | |||| |||| || || || || | ||| ||||| ||
Sbjct 40879 AATCTTGCTCTTGACATTGTCGATCGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTT 40820
Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|| || |||||||| || ||||||||||| ||
Sbjct 40819 GCCAGTCAGAGTCTTGACGAAGATCTGCATTTT 40787
Score = 100 bits (110), Expect = 2e-16
Identities = 161/231 (70%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
|| || | ||| |||| || | ||| | ||| |||||||||||||| || || ||
Sbjct 41472 CCACCTCGCAATCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGAC 41413
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
| | |||| |||| ||||||||||| || || || || | || ||||||||| | ||
Sbjct 41412 AAGGTTCGACCATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGGA 41353
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930
| || |||||||| || ||| || || | ||||||| ||| | ||
Sbjct 41352 ATACCTTCCTTGTCTTGGATTTTCGACTTAAC----GTTATCGATGGTATCAGATGATTC 41297
Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| |||| ||||||||||| || |||||||| || ||||| || |||||
Sbjct 41296 CACTTCGAGTGTTATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCAT 41246
>seq102
Length=189570
Score = 93.3 bits (102), Expect = 3e-14
Identities = 141/197 (72%), Gaps = 9/197 (5%)
Strand=Plus/Minus
Query 34782 ATTGTG-CTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTT 34840
|||||| | | | || |||||||| ||||| || || |||| |||| |||||||| ||
Sbjct 7833 ATTGTGACGTACCTTTTGAATGTTGTAGTCAGAGAGAGTTCGGCCATCTTCCAGCTGCTT 7774
Query 34841 TCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTG 34900
||| || || || | ||||||||||||| |||| | ||||||||| | |||||
Sbjct 7773 TCCCGCGAAAATCAATCGTTGCTGGTCTGGCGGGATACCCTCCTTGACCTGGATCTTGCT 7714
Query 34901 TTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCG 34956
||||| || | ||||| || || ||| || || | ||| ||||| || ||||
Sbjct 7713 CTTGAC--AT--TGTCGATTGTGTCTGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCG 7658
Query 34957 TGAGAGTCTTCACAAAG 34973
| || ||||| || |||
Sbjct 7657 TCAGGGTCTTTACGAAG 7641
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324632741445576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |