Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq154 109 4e-19 seq102 93.3 3e-14 >seq154 Length=71981 Score = 109 bits (120), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | ||| || || ||||||||||| || || ||||| | || | || || Sbjct 41683 AACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCAGAAAGAGTACGACCGTCCTC 41624 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || ||||||||||| || ||||||||||| || |||| | ||||||||||| Sbjct 41623 CAATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGCGGAATACCCTCCTTGTCCTG 41564 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| || || || | ||||| ||| | |||||| || | ||| || | Sbjct 41563 GATCTTGGACTTTAC--AT--TGTCGATAGTGTCAGAGCTCTCAACCTCCAAGGTAATTG 41508 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || ||||| |||||||| || || ||||| Sbjct 41507 TCTTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 41474 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATC 34831 |||||||| | || ||||||||||||||| ||||| | |||| | || | || || Sbjct 40998 ACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAGG-TGCGACCGTCTTC 40940 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || || || || || || ||||||||||| | || | ||||||||||| Sbjct 40939 AAGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTG 40880 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| ||||| | |||| |||| || || || || | ||| ||||| || Sbjct 40879 AATCTTGCTCTTGACATTGTCGATCGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTT 40820 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || |||||||| || ||||||||||| || Sbjct 40819 GCCAGTCAGAGTCTTGACGAAGATCTGCATTTT 40787 Score = 100 bits (110), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || | ||| |||| || | ||| | ||| |||||||||||||| || || || Sbjct 41472 CCACCTCGCAATCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGAC 41413 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | |||| |||| ||||||||||| || || || || | || ||||||||| | || Sbjct 41412 AAGGTTCGACCATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGGA 41353 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | || |||||||| || ||| || || | ||||||| ||| | || Sbjct 41352 ATACCTTCCTTGTCTTGGATTTTCGACTTAAC----GTTATCGATGGTATCAGATGATTC 41297 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || |||| ||||||||||| || |||||||| || ||||| || ||||| Sbjct 41296 CACTTCGAGTGTTATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCAT 41246 >seq102 Length=189570 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/197 (72%), Gaps = 9/197 (5%) Strand=Plus/Minus Query 34782 ATTGTG-CTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTT 34840 |||||| | | | || |||||||| ||||| || || |||| |||| |||||||| || Sbjct 7833 ATTGTGACGTACCTTTTGAATGTTGTAGTCAGAGAGAGTTCGGCCATCTTCCAGCTGCTT 7774 Query 34841 TCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTG 34900 ||| || || || | ||||||||||||| |||| | ||||||||| | ||||| Sbjct 7773 TCCCGCGAAAATCAATCGTTGCTGGTCTGGCGGGATACCCTCCTTGACCTGGATCTTGCT 7714 Query 34901 TTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCG 34956 ||||| || | ||||| || || ||| || || | ||| ||||| || |||| Sbjct 7713 CTTGAC--AT--TGTCGATTGTGTCTGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCG 7658 Query 34957 TGAGAGTCTTCACAAAG 34973 | || ||||| || ||| Sbjct 7657 TCAGGGTCTTTACGAAG 7641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632741445576