Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq123 91.5 2e-13 >seq123 Length=109856 Score = 91.5 bits (100), Expect = 2e-13 Identities = 380/595 (64%), Gaps = 6/595 (1%) Strand=Plus/Minus Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270 |||| || | |||||| |||| ||||| ||| ||||| | || | | |||||| | Sbjct 47968 TCATGAACAGATCTGGAGTCCAGAGAGCGTAAAACAAATCACGAGCACGAACTTCTTCCT 47909 Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330 | || ||| | || | || | || | | ||| || ||||| || || | | Sbjct 47908 TTCCGTGGTTCTTCCGGAGGTTCAGCCACTCAAAGACATCGGCGTGCCAGGGCTCAAGGT 47849 Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390 | | || | |||| |||| || || || || || || | |||| |||||||||| Sbjct 47848 AAACGGCAAAGGCACCAGGTCTCTTGTTGCCGCCCTGGTCGACGTATCGAGCAGTATTGT 47789 Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAAC 48450 | | |||| | ||| ||||||| || |||||| | || || || || | ||||| Sbjct 47788 CAAAGACTCGGAGCATAGGGACAAGGCCGTTTGATGTGCCGTTTGTGCCTGCGATATAGG 47729 Query 48451 TTCCACTAGCTCTTATATTACTAAT-TGAAATACCTATACCACCTGCCATTTTAGATATT 48509 ||| | |||| || || | | ||| || ||||| || || | || || || Sbjct 47728 AGCCAGTCGCTCGAATTTTGTGGACGTTCAAT-CCAATACCGCCGGCATTCTTTGAGATC 47670 Query 48510 AGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAAT 48569 | || || || || ||||| || ||||| || || || || |||| | | Sbjct 47669 ATGGCGCAGGTCTTTAGCGTATCGTAGATTCCCTCGATCGAGTCCTCCTTCATGTCGATC 47610 Query 48570 AGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCA 48629 | ||||| |||||||| | || || |||| ||| || | || || || || Sbjct 47609 AAGAAACATGATGACATTTGAGCATTTGGTGTGCCTGCATTGAAGAGGGTGGGCGAAGCG 47550 Query 48630 TGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCAT 48689 || | ||| |||| || | | || ||||| ||||| || || ||||| | Sbjct 47549 TGTGTGAACATCTTCTGGGACATGAGATTGTATGTCTCAATGACCTTCTCGATATCTTCT 47490 Query 48690 TGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATT--TTGT 48747 ||| || || | ||| || ||||| | ||| | || |||||||| | || || | Sbjct 47489 CCATGAATGCCAACAGACACGCGCATCAGCATGTGCTGTGGTCTTTC--CCATGGCTTCT 47432 Query 48748 TATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 | | ||| | |||||||||| |||||| ||| || || |||||||||||||| Sbjct 47431 TGTCATATTTGAGAAGATATGATCTTTCCAGTGTCTTGAAGCCAAAATAGTTGTA 47377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562107275279880