Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq17 107 2e-17 seq154 89.7 4e-12 >seq17 Length=466808 Score = 107 bits (118), Expect = 2e-17 Identities = 377/584 (65%), Gaps = 6/584 (1%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || ||||| ||||| || |||||||| || || ||| ||| | ||| | | Sbjct 246607 GCAATCGGTATTGATTTGGGTACCACATACTCCTGCGTGGGTATTTTCAGAGATGACAGA 246666 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 | ||||| ||||||||||| ||||| || ||||||| || |||| ||| ||||||| Sbjct 246667 ATCGAAATCATTGCCAATGACCAAGGCAATCGAACTACCCCCTCTTTTGTCGCTTTCACC 246726 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || ||| | | ||||| | ||||| | || | | | || || |||| Sbjct 246727 GACACCGAAAGACTGATCGGTGACTCTGCAAAGAACCAGGTCGCCATGAACCCAGCCAAC 246786 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | || || || ||||| | || || | | || ||| | ||||| ||| Sbjct 246787 ACAGTCTTCGACGCGAAACGACTGATAGGTCGCAAGTTCGCCGATCCTGAAGTTCAAGCA 246846 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACC--TTATAT-TGAA 550288 ||||||||||| | || ||| | | | | ||| || || | || | || Sbjct 246847 GATATGAAGCACTTCCCCTTCAAGGTCCTCGACAAGGGTGGCAAGCCAGTGATCTCTGTC 246906 Query 550289 GCTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTA 550348 | | ||| | || | || | ||| |||||||| | || ||||| |||||| | Sbjct 246907 GA-ATTCAAGGGTGAAGAGAAAACC--TTTACACCAGAAGAGATCTCATCGATGGTTCTT 246963 Query 550349 ATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATA 550408 | || ||| | | || || | | ||||| ||| | |||| || || Sbjct 246964 ACCAAGATGCGAGAGACTGCAGAATCATACCTTGGTGGTACAGTCAACAATGCTGTCATT 247023 Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| |||||||| || |||||||| || | || || || || |||||||| | || Sbjct 247024 ACTGTCCCAGCATACTTCAATGACTCTCAGAGACAGGCCACCAAGGATGCTGGTCTGATC 247083 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| | || |||||||| || ||||| || || || || ||||| | || || || Sbjct 247084 GCTGGCTTGAACGTTCTTCGGATCATCAACGAGCCAACCGCAGCTGCCATCGCCTACGGT 247143 Query 550529 CTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGA 550572 || || ||| | | ||| || | || || ||||||||||| Sbjct 247144 CTCGACAAAAAGACTGAGGGTGAGCGAAACGTCCTCATCTTTGA 247187 >seq154 Length=71981 Score = 89.7 bits (98), Expect = 4e-12 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 563263 AGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCT 563322 || ||||| || || ||| ||||| ||| |||||||| | | |||| ||| Sbjct 41457 AGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGACAAGGTTCGACCATCC 41398 Query 563323 TCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCT 563382 || || ||||| || || || || | | ||||| || || ||||| ||||| || ||| Sbjct 41397 TCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCT 41338 Query 563383 TGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGT 563441 || ||||| || || || || ||||||| ||| | || |||||| || | || Sbjct 41337 TGGATTTTCGACTTAACGTTATCGATGGTATCAGA-TGATTCCACTTCGAGTGTTATGGT 41279 Query 563442 TTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || || |||||||| || ||||||||||| Sbjct 41278 TTTGCCTGTGAGAGTTTTGACAAAAATTTGCAT 41246 Score = 86.0 bits (94), Expect = 5e-11 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 || ||||| || | || || ||||| || || ||| |||||||||| ||||| | Sbjct 41691 AGTCGGAGAACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCAGAAAGAGTACGA 41632 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 || || | ||| ||||||||||| || |||| ||||||||| || ||||| || || Sbjct 41631 CCGTCCTCCAATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGCGGAATACCCTCC 41572 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAGAGT 563435 || || || || || ||||| || || || |||| | | || | | || || Sbjct 41571 TTGTCCTGGATCTTGGACTTTACATTGTCGATAGTGTCAGAGCTCTCAACCTCCAAG-GT 41513 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || || || || || || |||||||||||||| Sbjct 41512 AATTGTCTTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 41474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029284524061330