Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq154 136 3e-27 >seq154 Length=71981 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||||| || || | ||||| || || || ||||| || ||||| ||||||||||| Sbjct 41701 GCCGCCCCGAAGTCGGAGAACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCAGA 41642 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | ||| |||| ||||| ||||| |||||||| |||||||| || ||||||| || Sbjct 41641 AAGAGTACGACCGTCCTCCAATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGCGG 41582 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||||||||||| ||||| |||||| | | || || || ||| || Sbjct 41581 AATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATAGTGTCAGAGCTCTCAAC 41522 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||||| || || || || | || || || ||||| ||||| Sbjct 41521 CTCCAAGGTAATTGTCTTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 41474 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || |||||||||||| | | |||| |||| |||| |||||||| ||||| Sbjct 41208 TCCTTCTGGATATTGTAATCACTCAAAGTTCGGCCGTCTTCCAGTTGCTTACCAGCAAAG 41149 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || |||||||| || || | |||| |||||||| || || || || ||| Sbjct 41148 ATGAGTCGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATTTTGCTCTTGACATTG 41089 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | ||| ||||| | || || || || || ||||| || || ||| Sbjct 41088 TCGATGGTATCGGAAGACTCAACCTCGAGAGTGATTGTCTTACCAGTCAATGTCTTCACA 41029 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 41028 AAAATCTGCAT 41018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380936592539091