Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq85 223 6e-53 seq123 123 5e-23 >seq85 Length=245923 Score = 223 bits (246), Expect = 6e-53 Identities = 565/848 (67%), Gaps = 30/848 (4%) Strand=Plus/Plus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 |||||||| ||||||| ||||| ||||| || ||||| ||| | | |||||||||||| Sbjct 84154 TGGTAGTCACCCACTCGCTTCTCGAAGAAATTGGTCTTGCCCGCTAGAGAGATGTTCTCC 84213 Query 47900 ATGAAGAGGAAGGGGTTGGGTG----TGTTATACACCCGTGTCAGGCCCATCTGTTCCAG 47955 || ||| || || |||| || ||| ||| | | || | ||||| | ||| Sbjct 84214 ATAAAGTCAAACGGATTGG-TGACCTTGTAGTACTTCGG-GTTA--CCCATACTTACCAA 84269 Query 47956 CAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015 ||| | || || ||| |||| ||||| | |||||| | ||||||||| | || Sbjct 84270 CAGCCGGTCGGCAACGAACTCAATGTACTGCTTCATGAGCTTCGAGTTCATGCCCAGTAG 84329 Query 48016 GGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075 | ||||| | |||| ||||| || || | ||| ||||| ||||| || | | || Sbjct 84330 AGCAACGGGGAGCGCCTCGGTGAGGAATTCTTGCTCGATCTGGACGGCCTCGACGATGAT 84389 Query 48076 ---CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAG-AGCATGC 48131 ||| ||| | || |||||| || | |||||| | || |||| || Sbjct 84390 GGCCTGGATAA---GTTCCTTTGAGGGGCGGTGGTTAAGGTGCGAG----AGCAGCAGGC 84442 Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191 | |||||||| |||||| ||| ||||||||| ||| || ||||||||||| || | Sbjct 84443 ACGCAAAGTCGGTGTGCATGCCCTCGTCCCGGGAGATAAGTTCGTTGGAGAAGGTAAGGC 84502 Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251 | ||||||| || | || ||||||||||| || | ||||| ||||| |||||||||| Sbjct 84503 CGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGA 84562 Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTG-TCTGAG 48310 | || ||||| || || || ||| || | || | |||| | ||| | ||||| Sbjct 84563 TACCTTCCACAGCGGCAAAGGCGACCAGACGCTGGGC-AAAGGTGGACTCTCGATCTGAA 84621 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGG 48370 |||||| || ||||| || || ||||| | ||||| || || || || ||||| | Sbjct 84622 ATCCAGCGGAGAGCCCATTCAGCTTTCTTTCTAATGCAAGGAATTGTATCGATGGCGTCG 84681 Query 48371 AAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTAC 48427 ||||| | | | | || || || || || | |||| || || |||| Sbjct 84682 AAGAGGTATTGTCTTTGCTTTGGCTCTTTAATGTATGTGTCAATGAGAAG---TGAGTAC 84738 Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487 || || ||| | || || || ||||||||| || || ||| | ||| || Sbjct 84739 ATTTCGCTGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAGCAGCGGGCTTCGGGG 84798 Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547 || || ||||| |||||| | ||| | || ||||| ||||| || || || || || Sbjct 84799 ACTTGGACTTCGCCGGAGAAGCGCTCGACAAGGTTCTCGTTGACGATGCCGTCCGAGGCG 84858 Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTC 48604 || ||||| || ||||| || || ||| | || |||| | | |||| | | Sbjct 84859 GCGAAGAAAGCGAGGACGTGGGAAACGAAGTAACGTTCGTCATCGTTGAGCTTGTGGTGC 84918 Query 48605 CAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCT 48664 ||| | || | ||||| |||||| |||||||| | ||||||||||| || ||| Sbjct 84919 CAGTCGTGGAGATCTTTCGACAGGTCGACTTCTTCGGCGGTCCAGAAGGAGGCTTCGGCT 84978 Query 48665 TTTTTGTA 48672 || ||||| Sbjct 84979 TTCTTGTA 84986 >seq123 Length=109856 Score = 123 bits (136), Expect = 5e-23 Identities = 1009/1603 (63%), Gaps = 86/1603 (5%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || || || | ||| ||| ||||||| |||| || |||||||||||||| ||||| Sbjct 49208 ACGGTGAATTGGATTGGCGCAGAAGCAGCCATGGTTCGAAGATAGTACATGCCAGTCTTG 49149 Query 212613 AGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGG 212672 || ||| | |||||| | |||||| | |||| |||| | | | ||| Sbjct 49148 AGACCCATTTTCCAGCCAGCGAAGTGCATAGAAGTGA---TCTTGCCCATGGT----TGG 49096 Query 212673 TCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTG 212732 | |||| |||||| | ||||| ||||| ||| || ||||| | | | Sbjct 49095 T--TCCTT------CAGATGAATGTTCAACGACTGTGACTGATCAATGAAGGCACCTCGA 49044 Query 212733 TCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCT 212792 ||||||||||| | |||||| |||||| |||| |||||| || |||||| ||| | || Sbjct 49043 TCAGCGGCCATCTGGATGATAGTTCTCTGAGAGATCTCCCAGACAGTCTTGTAGAGTGCT 48984 Query 212793 TTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCC--CCTGTGTA-TGGTCAGC 212849 |||| ||| ||| | | || | |||||| | || || ||| | | || | Sbjct 48983 TTGATGTCGGTTGGAATGTTTGGTACGTTCTGAATTGAACCGCCCTCGGCAATGATTCTG 48924 Query 212850 TGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTT-GACCAGGTGAGG 212908 | | ||||| || ||| ||||| | || | | ||| || ||| || Sbjct 48923 TTCTT---CATGTTGTCCGACCACAGGCCAA-GATCAACGAGATCTTTGAGCAGCCATGG 48868 Query 212909 GTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGG 212968 ||||| | ||| || || |||| | ||| | | ||| | ||| || || || || Sbjct 48867 ATTGACGACCTGAAATTCGCCTGCTAACACACGACGGGAGTAGATGTTGGATGTATATGG 48808 Query 212969 CTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCAC 213028 ||||| || || || || |||| ||||| | || ||| || |||||||| || || Sbjct 48807 CTCGAAGCATTCATTATTGCCCAATATCTGCGACGTAGAGGCGGTCGGCATGGGTGCGAC 48748 Query 213029 CAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGA-GGCGCCGAAGCTCTGCCCAGTCCC 213087 || ||| || | || || | || | || ||| ||| || ||||||||| Sbjct 48747 AAGAAGAGAATTTCGAACACCATACTGAGCAATCTTGGCTTTCAAGGCCT-CCCAGTCCC 48689 Query 213088 ATCTGCCAGACAGGTCCTCGTCCT-TCACGTTCCACATGTCAAACTGCAAGATGCCTTTG 213146 | ||||| | | | ||| ||| | ||| |||| | | || | ||| Sbjct 48688 AA---------AGGTC-TGTTGGTGTCAGACCCCAGAGGTCGTACTGTA-GCTGACCTTG 48640 Query 213147 CTCACGGGGCT-GCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGA 213205 | |||| ||||| || | ||| || ||| | ||||| || || || || || Sbjct 48639 AGAAATGGGCGAGCCCTCATAGGTTTCGTATGGACCAAGTTCCTTCGCAAGGTCACATGA 48580 Query 213206 CGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCT-TCTTGGCCT 213264 || ||| || |||| |||||| || || ||||| | ||||||||| ||||| | | Sbjct 48579 AGCTGTCAGAGCTGCGTGGTAGATAGTCTCGAATATTTGAATGTTGAGCTGTCTTG-CTT 48521 Query 213265 CTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGA 213324 | || || ||| |||| | | | |||| ||||||| || || || || || | Sbjct 48520 CGGGAGAATCGAACGGCAGTCTAAGGGCAAGGAAAGCATCAGCAAGGCCTTGAACACCAA 48461 Query 213325 TGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCC---AAGGGGTAAAAGT 213381 || ||||||| |||||| | ||| ||| | | | ||| | |||||| ||| Sbjct 48460 GACCAATGGGTCGGTGTCTGAAGTTGCTCTTT---CTCGCTTCCGGGACGGGGTAGTAGT 48404 Query 213382 TGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGT--- 213438 || |||||||||||||| ||||| || || | | |||| | | ||| Sbjct 48403 TGATCTCGATGATCTTGTTCAGGTTCTTAGTCATGACCTGGATGACCTCGTGCAGTCGGC 48344 Query 213439 ---ACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGG 213495 | || | ||||| | | | | ||| || || |||| || | | Sbjct 48343 CAAAGTCAT-ATTGACCT--TCGACTTGGTCA---ACGAAAGATGGCAAAGCAACAGAAG 48290 Query 213496 CCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGT 213555 ||| ||||| ||||| ||||| | || | | |||||||| ||||| || ||||||| || Sbjct 48289 CCAAATTGCAGACGGCGACCTCGTCAGGGGCGGTGTACTCAATGATTTCTGTGCACAAGT 48230 Query 213556 TGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGT 213615 || | | ||||||||||| ||||| || || ||| |||| | ||||||| Sbjct 48229 TGGAGGACTTGATGGTGCCCAAGTTCTTCTGATTACTTTTTCTGTTGCAGGCGTCCTTGT 48170 Query 213616 AGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC--TCCAGAGGTA 213673 |||||||| | ||| || ||||| ||||| | ||| | |||| ||| | | Sbjct 48169 AGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTCCA--AGATGGCATACCACAACTT 48112 Query 213674 CCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGT-AGCCTCGTACTGTTCGTAGAGCT 213732 | ||||||| | ||| | || ||| | | ||| |||| ||| | || Sbjct 48111 CTGTGCCTTGA----TTGTCTGTCGGCCTCGGCCTTCCTTCTCATACTTCTCGAACAGAG 48056 Query 213733 CGTTGAATTCGTGGCCCCAGACCCTGTC---CAGTCCCGGACAGGATGC---GGGACACA 213786 | | ||| || | || || | ||| | || ||| | | | ||| || | Sbjct 48055 CCTCGAACTCCTCACCGTAG---CAGTCAGATAAACCTGGA---GCTTCGTTGGGGCAGA 48002 Query 213787 TGAGGCTCCAGTCCCCG-TCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGC 213845 ||| ||||||| ||| | |||| || | || ||||||||| || || ||| || Sbjct 48001 AGAGAGTCCAGTCTCCGTTTTTCTC-AACCCGCTTCATGAACAGATCTGGAGTCCAGAGA 47943 Query 213846 GCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGA 213905 ||| |||| || | | | || ||| ||| ||| || || || | || Sbjct 47942 GCGTAAAACAAATCACGAGCACGAACTTCTTCCTTTCCGTGGTTCTTCCGGAGGTTCAGC 47883 Query 213906 AAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTC--- 213962 | ||||||| || |||||||| ||||| | ||| | ||||||||| || || ||| Sbjct 47882 CACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAACGGCAAAGGCACCAGGTCTCTTG 47823 Query 213963 TTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGC 214022 |||||||||||||| || | || ||| |||| || || | || || || Sbjct 47822 TTGCCGCCCTGGTCGACGTATCGAGCAGTATTGTCAAAGACTCGGAGCATAGGGACAAGG 47763 Query 214023 CCGTTGGACTGT-CCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCAT 214081 ||||| || ||| ||||| || || || ||||| ||||| | || | | ||| | Sbjct 47762 CCGTTTGA-TGTGCCGTTTGTGCCTGCGATATAGGAGCCAGTCGCTCGAATTTTGTGGAC 47704 Query 214082 GGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAG 214124 | | || || || ||||| | ||| ||||||||||||||| Sbjct 47703 GTTCAATCCAATACCGCCGGCATTCTTTGAGATCATGGCGCAG 47661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931530273217280