Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq123 205 2e-47
seq85 143 5e-29
>seq123
Length=109856
Score = 205 bits (226), Expect = 2e-47
Identities = 827/1273 (65%), Gaps = 55/1273 (4%)
Strand=Plus/Minus
Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAG-TCTCTTGGCCTCGGG 221475
||||| || ||||||||||| ||||| || || ||||||| | ||||| | |||||
Sbjct 48575 GTCAGAGCTGCGTGGTAGATAGTCTCGAATATTTGAATGTTGAGCTGTCTTG-CTTCGGG 48517
Query 221476 AGAAGTGAAGGGCATACGCAG--CATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533
|||| ||| |||| | || || ||||| | || || || || || || || | |
Sbjct 48516 AGAATCGAACGGCAGTCTAAGGGCAAG-GAAAG-CATCAGCAAGGCCTTGAACACCAAGA 48459
Query 221534 CCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593
|| ||||| | |||||| |||| |||||| || ||||| || ||||||
Sbjct 48458 CCAATGGGTCGGTGTCTGAAGTTGCTCTTTCTCGCTTCCGGGACGGGGTAGTAGTTGATC 48399
Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653
||||| | ||||| |||||| ||| ||||| | | |||||| ||| || || |
Sbjct 48398 TCGATGATCTTGTTCAGGTTCTTAGTCATGACCTGGATGACCTCGTGCAG--TC-GGCCA 48342
Query 221654 TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713
|| | | | || || | ||| || || |||| | |||||
Sbjct 48341 ---AAGTCATATTGACCTTCGACTTGG------TCAACGAAAGATGGCAAAGCAACAGAA 48291
Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773
|||| || || ||||| |||||||| | ||| |||| ||||| ||||| || | |
Sbjct 48290 GCCAAATTGCAGACGGCGACCTCGTCAGGGGCGGTGTACTCAATGATTTCTGTGCACAAG 48231
Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833
||| | |||||||||| |||| || || |||||| || | ||| |||||||||
Sbjct 48230 TTGGAGGACTTGATGGTGCCCAAGTTCTTCTGATTACTTTTTCTGTTGCAGGCGTCCTTG 48171
Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893
|||||||| || || |||||||| ||| ||| ||| || | ||| | | |
Sbjct 48170 TAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTCCAAGATGGCATACCACAACT-T 48112
Query 221894 CTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTT----TCATAC--CCGGTATA 221946
||| || | | ||| || | || ||||| ||| |||||| | | | |
Sbjct 48111 CTGTGCCTTGATTGTC----TGTCGGC---CTCGGCCTTCCTTCTCATACTTCTCGAACA 48059
Query 221947 GAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACAT 222006
|||| | | |||| |||||||| || | |||||| | ||| || |
Sbjct 48058 GAGCCT--CGAACTCCTCACCGTAGCAGTCAGATAAACCTGGAGCTTCGTTGGGGCAGAA 48001
Query 222007 CAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGC 222066
||| |||||| ||| | | |||| || |||||| || || || |||| || ||
Sbjct 48000 GAGAGTCCAGTCTCCGTTTTTCTCAACCCGCTTCATGAACAGATCTGGAGTCCAGAGAGC 47941
Query 222067 CTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAA 222126
| ||| | ||| | | || || ||| |||| ||| |||| || | || |
Sbjct 47940 GTAAAACAAATCACGAGCACGAACTTCTTCCTTTCCGTGGTTCTTCCGGAGGTTCAGCCA 47881
Query 222127 CTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTT 222186
|||||| | || |||||||| ||||| || || ||||| | || || |||| ||||||
Sbjct 47880 CTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAACGGCAAAGGCACCAGGTCTCTTGTT 47821
Query 222187 GCCACCCTGATCCACCATCCTCTCCAG-AGCGTTG---AAGATGCGAAGGGTCGGTACCA 222242
||| ||||| || || | || || || ||| |||| || || | || || |
Sbjct 47820 GCCGCCCTGGTCGACG----TATCGAGCAGTATTGTCAAAGACTCGGAGCATAGGGACAA 47765
Query 222243 GTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTC-AGGTTACTG 222301
| ||||| ||| ||||| ||||| || || | || | | ||| | || ||
Sbjct 47764 GGCCGTTTGATGTGCCGTTTGTGCCTGCGATATAGGAGCCA--GTCGCTCGAATTTTGTG 47707
Query 222302 GCAGA-CATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTC 222360
| | || || ||||| ||||| | || ||||||||||||||| |||| || || ||
Sbjct 47706 GACGTTCAATCCAATACCGCCGGCATTCTTTGAGATCATGGCGCAGGTCTTTAGCGTATC 47647
Query 222361 CATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAG- 222419
||| ||||| || ||||||||||| | || | || ||||| || ||||| ||||
Sbjct 47646 GTAGATTCCCTCGATCGAGTCCTCCTTCATGTCGATCAAGAAACATGATGACATTTGAGC 47587
Query 222420 ATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCT-AGAC 222478
||||||| | | || || || || ||||| |||||||| || | | || |||
Sbjct 47586 ATTTGGT-GTGCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGTGAA-CATCTTCTGGGAC 47529
Query 222479 ATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT--CTGCATGGCGC 222536
|| |||| ||| ||||| | ||| | |||| | || || ||||| | || | | |
Sbjct 47528 ATGAGATTGTATGTCTCAATGACCTTCTCGATATCTTCTCCATGAATGCCAACA-GACAC 47470
Query 222537 ATCTCATGTACATGTACTGGGGCCTCTCCACAGGACCCTTGGAGCTGGAGAGCAGGTACG 222596
| ||| ||||| ||| || || ||| || |||| ||| || || |
Sbjct 47469 -GCGCATCAGCATGTGCTGTGGTCTTTCCCATGGCTTCTTGTCATATTTGAGAAGATATG 47411
Query 222597 ATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGG 222656
|| ||||||| |||||||| ||||| |||||| || ||| |||| | ||| || | ||
Sbjct 47410 ATCTTTCCAGTGTCTTGAAGCCAAAATAGTTGTAGTTAAAATCTCGGTCGTATACAATGG 47351
Query 222657 CGGCGTCCAGCTC 222669
| | || |||||
Sbjct 47350 CAGAGTTGAGCTC 47338
>seq85
Length=245923
Score = 143 bits (158), Expect = 5e-29
Identities = 307/460 (67%), Gaps = 11/460 (2%)
Strand=Plus/Minus
Query 25867 ACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCG 25926
|| |||| | |||| ||||| |||||||| |||||||| || ||||| ||| ||| ||
Sbjct 84605 ACCTTTGCCCAGCGTCTGGTCGCCTTTGCCGCTGTGGAAGGTATCTTCTTCTCCGGCTCC 84546
Query 25927 TTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAAC 25986
|| || ||||||||||||||||| || || ||||||||| || ||| ||||||
Sbjct 84545 TTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTTACCTTCTCCAAC 84486
Query 25987 GAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGC 26046
|| || ||| | |||||||||| | |||| || ||||| |||||||| | ||
Sbjct 84485 GAACTTATCTCCCGGGACGAGGGCATGCACACCGACTTTGCGTGCCTGCTGCTCTCG--- 84429
Query 26047 CACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAG--TATCATCAAAGAGGCTGTGG 26104
||| | |||| || ||||| || | | | ||| |||||| ||||| ||
Sbjct 84428 CACCTTAACCACCGCCC--CTCAAAGGAACTTATCCAGGCCATCATCGTCGAGGCCGTCC 84371
Query 26105 AGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACA 26164
|||||||| | || || | ||||||||||| |
Sbjct 84370 AGATCGAGCAAGAATTCCTCACCGAGGCGCTCCCCGTTGCTCTACTGGGCATGAACTCGA 84311
Query 26165 GACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAG-CTGGGACTC 26223
||||||| || |||||||||| || ||||||| ||| || | || |||| |
Sbjct 84310 AGCTCATGAAGCAGTACATTGAGTTCGTTGCCGACCGGCTGTTG-GTAAGTATGGGTAAC 84252
Query 26224 GCCAGACTCTAC-AGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGG 26282
| | |||| || | || || ||||| ||||||||||| ||||| || | | ||
Sbjct 84251 CCGAAGTACTACAAGGTCACC-AATCCGTTTGACTTTATGGAGAACATCTCTCTAGCGGG 84193
Query 26283 GAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322
|||||||| ||||| || ||| | || || ||||| |||
Sbjct 84192 CAAGACCAATTTCTTCGAGAAGCGAGTGGGTGACTACCAA 84153
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928842280508480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |