Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq123 205 2e-47 seq85 143 5e-29 >seq123 Length=109856 Score = 205 bits (226), Expect = 2e-47 Identities = 827/1273 (65%), Gaps = 55/1273 (4%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAG-TCTCTTGGCCTCGGG 221475 ||||| || ||||||||||| ||||| || || ||||||| | ||||| | ||||| Sbjct 48575 GTCAGAGCTGCGTGGTAGATAGTCTCGAATATTTGAATGTTGAGCTGTCTTG-CTTCGGG 48517 Query 221476 AGAAGTGAAGGGCATACGCAG--CATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533 |||| ||| |||| | || || ||||| | || || || || || || || | | Sbjct 48516 AGAATCGAACGGCAGTCTAAGGGCAAG-GAAAG-CATCAGCAAGGCCTTGAACACCAAGA 48459 Query 221534 CCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593 || ||||| | |||||| |||| |||||| || ||||| || |||||| Sbjct 48458 CCAATGGGTCGGTGTCTGAAGTTGCTCTTTCTCGCTTCCGGGACGGGGTAGTAGTTGATC 48399 Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653 ||||| | ||||| |||||| ||| ||||| | | |||||| ||| || || | Sbjct 48398 TCGATGATCTTGTTCAGGTTCTTAGTCATGACCTGGATGACCTCGTGCAG--TC-GGCCA 48342 Query 221654 TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713 || | | | || || | ||| || || |||| | ||||| Sbjct 48341 ---AAGTCATATTGACCTTCGACTTGG------TCAACGAAAGATGGCAAAGCAACAGAA 48291 Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 |||| || || ||||| |||||||| | ||| |||| ||||| ||||| || | | Sbjct 48290 GCCAAATTGCAGACGGCGACCTCGTCAGGGGCGGTGTACTCAATGATTTCTGTGCACAAG 48231 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||| | |||||||||| |||| || || |||||| || | ||| ||||||||| Sbjct 48230 TTGGAGGACTTGATGGTGCCCAAGTTCTTCTGATTACTTTTTCTGTTGCAGGCGTCCTTG 48171 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 |||||||| || || |||||||| ||| ||| ||| || | ||| | | | Sbjct 48170 TAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTCCAAGATGGCATACCACAACT-T 48112 Query 221894 CTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTT----TCATAC--CCGGTATA 221946 ||| || | | ||| || | || ||||| ||| |||||| | | | | Sbjct 48111 CTGTGCCTTGATTGTC----TGTCGGC---CTCGGCCTTCCTTCTCATACTTCTCGAACA 48059 Query 221947 GAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACAT 222006 |||| | | |||| |||||||| || | |||||| | ||| || | Sbjct 48058 GAGCCT--CGAACTCCTCACCGTAGCAGTCAGATAAACCTGGAGCTTCGTTGGGGCAGAA 48001 Query 222007 CAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGC 222066 ||| |||||| ||| | | |||| || |||||| || || || |||| || || Sbjct 48000 GAGAGTCCAGTCTCCGTTTTTCTCAACCCGCTTCATGAACAGATCTGGAGTCCAGAGAGC 47941 Query 222067 CTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAA 222126 | ||| | ||| | | || || ||| |||| ||| |||| || | || | Sbjct 47940 GTAAAACAAATCACGAGCACGAACTTCTTCCTTTCCGTGGTTCTTCCGGAGGTTCAGCCA 47881 Query 222127 CTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTT 222186 |||||| | || |||||||| ||||| || || ||||| | || || |||| |||||| Sbjct 47880 CTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAACGGCAAAGGCACCAGGTCTCTTGTT 47821 Query 222187 GCCACCCTGATCCACCATCCTCTCCAG-AGCGTTG---AAGATGCGAAGGGTCGGTACCA 222242 ||| ||||| || || | || || || ||| |||| || || | || || | Sbjct 47820 GCCGCCCTGGTCGACG----TATCGAGCAGTATTGTCAAAGACTCGGAGCATAGGGACAA 47765 Query 222243 GTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTC-AGGTTACTG 222301 | ||||| ||| ||||| ||||| || || | || | | ||| | || || Sbjct 47764 GGCCGTTTGATGTGCCGTTTGTGCCTGCGATATAGGAGCCA--GTCGCTCGAATTTTGTG 47707 Query 222302 GCAGA-CATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTC 222360 | | || || ||||| ||||| | || ||||||||||||||| |||| || || || Sbjct 47706 GACGTTCAATCCAATACCGCCGGCATTCTTTGAGATCATGGCGCAGGTCTTTAGCGTATC 47647 Query 222361 CATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAG- 222419 ||| ||||| || ||||||||||| | || | || ||||| || ||||| |||| Sbjct 47646 GTAGATTCCCTCGATCGAGTCCTCCTTCATGTCGATCAAGAAACATGATGACATTTGAGC 47587 Query 222420 ATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCT-AGAC 222478 ||||||| | | || || || || ||||| |||||||| || | | || ||| Sbjct 47586 ATTTGGT-GTGCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGTGAA-CATCTTCTGGGAC 47529 Query 222479 ATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT--CTGCATGGCGC 222536 || |||| ||| ||||| | ||| | |||| | || || ||||| | || | | | Sbjct 47528 ATGAGATTGTATGTCTCAATGACCTTCTCGATATCTTCTCCATGAATGCCAACA-GACAC 47470 Query 222537 ATCTCATGTACATGTACTGGGGCCTCTCCACAGGACCCTTGGAGCTGGAGAGCAGGTACG 222596 | ||| ||||| ||| || || ||| || |||| ||| || || | Sbjct 47469 -GCGCATCAGCATGTGCTGTGGTCTTTCCCATGGCTTCTTGTCATATTTGAGAAGATATG 47411 Query 222597 ATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGG 222656 || ||||||| |||||||| ||||| |||||| || ||| |||| | ||| || | || Sbjct 47410 ATCTTTCCAGTGTCTTGAAGCCAAAATAGTTGTAGTTAAAATCTCGGTCGTATACAATGG 47351 Query 222657 CGGCGTCCAGCTC 222669 | | || ||||| Sbjct 47350 CAGAGTTGAGCTC 47338 >seq85 Length=245923 Score = 143 bits (158), Expect = 5e-29 Identities = 307/460 (67%), Gaps = 11/460 (2%) Strand=Plus/Minus Query 25867 ACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCG 25926 || |||| | |||| ||||| |||||||| |||||||| || ||||| ||| ||| || Sbjct 84605 ACCTTTGCCCAGCGTCTGGTCGCCTTTGCCGCTGTGGAAGGTATCTTCTTCTCCGGCTCC 84546 Query 25927 TTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAAC 25986 || || ||||||||||||||||| || || ||||||||| || ||| |||||| Sbjct 84545 TTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTTACCTTCTCCAAC 84486 Query 25987 GAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGC 26046 || || ||| | |||||||||| | |||| || ||||| |||||||| | || Sbjct 84485 GAACTTATCTCCCGGGACGAGGGCATGCACACCGACTTTGCGTGCCTGCTGCTCTCG--- 84429 Query 26047 CACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAG--TATCATCAAAGAGGCTGTGG 26104 ||| | |||| || ||||| || | | | ||| |||||| ||||| || Sbjct 84428 CACCTTAACCACCGCCC--CTCAAAGGAACTTATCCAGGCCATCATCGTCGAGGCCGTCC 84371 Query 26105 AGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACA 26164 |||||||| | || || | ||||||||||| | Sbjct 84370 AGATCGAGCAAGAATTCCTCACCGAGGCGCTCCCCGTTGCTCTACTGGGCATGAACTCGA 84311 Query 26165 GACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAG-CTGGGACTC 26223 ||||||| || |||||||||| || ||||||| ||| || | || |||| | Sbjct 84310 AGCTCATGAAGCAGTACATTGAGTTCGTTGCCGACCGGCTGTTG-GTAAGTATGGGTAAC 84252 Query 26224 GCCAGACTCTAC-AGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGG 26282 | | |||| || | || || ||||| ||||||||||| ||||| || | | || Sbjct 84251 CCGAAGTACTACAAGGTCACC-AATCCGTTTGACTTTATGGAGAACATCTCTCTAGCGGG 84193 Query 26283 GAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 |||||||| ||||| || ||| | || || ||||| ||| Sbjct 84192 CAAGACCAATTTCTTCGAGAAGCGAGTGGGTGACTACCAA 84153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928842280508480