Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 4e-15 >seq1 Length=402072 Score = 96.9 bits (106), Expect = 4e-15 Identities = 259/391 (66%), Gaps = 15/391 (4%) Strand=Plus/Plus Query 138187 CAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGTAAAT 138246 |||| || || || ||||| || || || ||||| || |||||||| |||||||| | || Sbjct 147933 CAATGGGTCCAACTCCAGGTCCACCTCCACCATGAGGTATACAGAAAGTCTTATGCAGAT 147992 Query 138247 TTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCATTTA 138306 | ||||| || || || || ||| |||| || | ||| || | ||||| || | Sbjct 147993 TGAGATGGCACACGTCGGCTCCAATCTCACCAGGGCTGCATAGTCCAATTTGTGCGTTCA 148052 Query 138307 GATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATCTGTC 138366 || ||||| || | || || || || || | || || || | || || | || Sbjct 148053 TGTTGGCACCGTCCATGTAAACTTGCCCGCCGTGTTCGTGCACAAGCTCGCACACACGTT 148112 Query 138367 TGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGAGAGTT 138426 |||| | | ||||| ||||| || |||||| || | ||| ||| | ||| | Sbjct 148113 TGATCTCAGGCTCAAAGACACCGAACGTGCTTGGATACGTGACCATGATAGCAGCGAGAT 148172 Query 138427 CAAATGTATTCATGATTGCTTT---CTTCTCT---AGATCTTTGATGTCTATGTTGCCA- 138479 ||| |||| || ||| ||| ||| || ||||| | || | ||||||| Sbjct 148173 ----TGTCAGCATGCTT--TTTGCACTTGTCTTCAAGGTCTTTTAAATCGAGGTTGCCAG 148226 Query 138480 TCATCAT--CACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGAT 138537 | || | |||| |||| ||||||||||| || ||||| | ||||| || |||| Sbjct 148227 TTTTCGTGTCACATTTGATTGTAACAACTTTCATGCCAGCCATCGCAGCACTCGCGGGAT 148286 Query 138538 TAGTTCCATGTGCTGACTCTGGTATCAGACA 138568 | || ||||| ||||| | || ||||| || Sbjct 148287 TTGTGCCATGAGCTGATACAGGGATCAGGCA 148317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578996829466840