Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq123 284 1e-71 seq85 145 9e-30 seq69 95.1 1e-14 >seq123 Length=109856 Score = 284 bits (314), Expect = 1e-71 Identities = 1133/1763 (64%), Gaps = 49/1763 (3%) Strand=Plus/Plus Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 ||||| |||||| ||||| | ||||| || | | ||||| || || ||||| || || Sbjct 47442 GGAAAGACCACAGCACATGCTGATGCGCGTGTCTGTTGGCATTCATGGAGAAGATATCGA 47501 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAAC 75324 ||| | ||||||||| | |||||||| ||||||| ||||| | || || Sbjct 47502 GAAGGTCATTGAGACATACAATCTCATGTCCCAGAAGATGTTCACACACGCTTCGCCCAC 47561 Query 75325 CCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAA 75384 |||||||||||| || ||||||| | || ||||| || ||| | |||| || || Sbjct 47562 CCTCTTCAATGCAGGCACACCAAATGCTCAAATGTCATCATGTTTCTTGATCGACATGAA 47621 Query 75385 GGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTG 75444 ||||||||| ||| | || ||||| | || || | | || || ||||||||| Sbjct 47622 GGAGGACTCGATCGAGGGAATCTACGATACGCTAAAGACCTGCGCCATGATCTCAAAGAA 47681 Query 75445 GGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCG-G 75502 || || |||||||| || || |||| | | |||| | | ||| ||| ||| Sbjct 47682 TGCCGGCGGTATTGGATTGAACGTCCACAAAATTCGAGCGACT--GGCTCCTATATCGCA 47739 Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562 || ||||| || |||| | || || | || ||||| || || ||| || || || Sbjct 47740 GGCACAAACGGCACATCAAACGGCCTTGTCCCTATGCTCCGAGTCTTTGACAATACTGCT 47799 Query 75563 CGCTATGTAAATCAAGCGGGGCGTC-GCAAG------GGGTCCATCGCGGTCTACTTGGA 75615 || || | || | | ||||| | |||| || || | || || ||| | || Sbjct 47800 CGATACG----TCGACCAGGGCGGCAACAAGAGACCTGGTGCCTTTGCCGTTTACCTTGA 47855 Query 75616 ACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGA 75675 || ||||| |||||| || | |||| || | | || ||||| || | ||||| Sbjct 47856 GCCCTGGCACGCCGATGTCTTTGAGTGGCTGAACCTCCGGAAGAACCACGGAAAGGAAGA 47915 Query 75676 GGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGT 75735 | ||| | | ||| | |||| | || |||| |||||| || |||||||||||||| Sbjct 47916 AGTTCGTGCTCGTGATTTGTTTTACGCTCTCTGGACTCCAGATCTGTTCATGAAGCGGGT 47975 Query 75736 TGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGC 75795 |||| | || | ||| |||| ||||| || || | || |||||| | || ||| Sbjct 47976 TGAGAAAAACGGAGACTGGACTCTCTTCTGCCCCAACGAAGCTCCAGGTTTATCTGACTG 48035 Query 75796 GGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGC 75855 ||||||||||| || || || | | |||||||| |||| || ||| | Sbjct 48036 CTACGGTGAGGAGTTCGAGGCTCTGTTCGAGAAGTATGAGAAGGAAGGCCGAGGCCGACA 48095 Query 75856 GACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAA 75914 ||| | | || | | || ||| ||| | || || | | | ||||| |||||||||| Sbjct 48096 GACAAT-CAAGGCACAGAAGTTGTGGTATGCCATCTTGGAGGCCCAGACTGAGACTGGAA 48154 Query 75915 CACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAA 75974 |||| ||||| |||||||| || || |||| || ||||| || ||||| ||||| | Sbjct 48155 ACCCATTCATGCTCTACAAGGACGCCTGCAACAGAAAAAGTAATCAGAAGAACTTGGGCA 48214 Query 75975 CAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGG 76034 | |||||| ||| || | ||||| ||||| | |||||||| | || ||| | Sbjct 48215 CCATCAAGTCCTCCAACTTGTGCACAGAAATCATTGAGTACACCGCCCCTGACGAGGTCG 48274 Query 76035 CTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCA--- 76091 | || ||||||||||| || | || | ||| | | || ||| | | ||| | Sbjct 48275 CCGTCTGCAATTTGGCTTCTGTTGCTTTGCCA---TCTTTCGTTGACCA-AGTCGAAGGT 48330 Query 76092 -CTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGA 76150 | ||| | || ||| || || ||| || | | || || || || ||| Sbjct 48331 CAATATGACTTTGGCCGACTGCACGAGGTCATCCAGGTCATGACTAAGAACCTGAACAAG 48390 Query 76151 GTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGA 76210 |||| || | || | || ||||| | ||| ||||| || | ||||| || Sbjct 48391 ATCATCGAGATCAACTACTACCCCGTCCCGGAAGCGAGAAAGAGCAACTTCAGACACCGA 48450 Query 76211 CCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTA----CGC 76266 || |||||| | ||||||||||| || || |||| || | |||| || | Sbjct 48451 CCCATTGGTCTTGGTGTTCAAGGCCTTGCTGATGCTTTCCT----TGCCCTTAGACTGCC 48506 Query 76267 ATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGC 76326 || ||||| ||||| | || | || || || || || || || || ||||| Sbjct 48507 GTTCGATTCTCCCGAAGCAAGACAGCTCAACATTCAAATATTCGAGACTATCTACCACGC 48566 Query 76327 ATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGG 76386 | | ||| || ||||| | || | | | ||| | || || || | |||||| Sbjct 48567 AGCTCTGACAGCTTCATGTGACCTTGCGAAGGAACTTGGTCCATACGAAACCTATGAGGG 48626 Query 76387 TTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAA 76446 || ||| || ||||| ||| |||| || | |||| ||| ||||| | | Sbjct 48627 CTCGCCCATTTCTCAAGGTCAGCTACAGTACGACCTCTGGG-GTCTGACACCAA-CAGAC 48684 Query 76447 C--TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTT 76504 | | |||||||| | | || | || || | ||| |||| || |||| Sbjct 48685 CTTTGGGACTGGGAGGCCTTGAAAGCCAAGATTGCTCAGTATGGTGTTCGAAATTCTCTT 48744 Query 76505 TTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 76564 | | ||||| ||||| || ||||| || | || || ||||| |||||||||||||| Sbjct 48745 CTTGTCGCACCCATGCCGACCGCCTCTACGTCGCAGATATTGGGCAATAATGAATGCTTC 48804 Query 76565 GAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTC 76624 || ||||| ||| | ||||||||| | | | ||||| || ||| | ||| Sbjct 48805 GAGCCATATACATCCAACATCTACTCCCGTCGTGTGTTAGCAGGCGAATTTCAGGTCGTC 48864 Query 76625 AA--CAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGG 76682 || || | || |||| || ||| | |||| || ||||| | | |||||| Sbjct 48865 AATCCATG--GCTGCTCAAAGATCTCGTTGATCTTGGCCTGTGGTCGGACAACATGAAGA 48922 Query 76683 ATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCA 76742 | || | | ||| ||||| ||||| || | || | || ||| || |||| Sbjct 48923 ACAGAATCATTGCCGAGGGCGGTTCAATTCAGAACGTACCAAACATTCCAACCGACATCA 48982 Query 76743 AGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAG 76802 | |||||| || || ||||| ||| || | | |||| | |||||||| | Sbjct 48983 AAGCACTCTACAAGACTGTCTGGGAGATCTCTCAGAGAACTATCATCCAGATGGCCGCTG 49042 Query 76803 ATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAG--TCCA 76858 |||| ||| ||||||||||| ||||| ||| |||| |||||| ||| ||| Sbjct 49043 ATCGAGGTGCCTTCATTGATC--AGTCACAGTCGTTGAA--CATTCATCTGAAGGAACCA 49098 Query 76859 ACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGA 76918 || ||| |||| || |||||||||| | | |||||| ||| ||||| || || Sbjct 49099 ACCATGGGCAAGATCACTTCTATGCACTTCGCTGGCTGGAAAATGGGTCTCAAGACTGGC 49158 Query 76919 ATGTACTATCTCCGATCAAAGGC 76941 ||||||||||| ||| | | ||| Sbjct 49159 ATGTACTATCTTCGAACCATGGC 49181 >seq85 Length=245923 Score = 145 bits (160), Expect = 9e-30 Identities = 307/453 (68%), Gaps = 10/453 (2%) Strand=Plus/Minus Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 |||| ||| |||| || | || ||||| |||||| ||||||||||||||||| || | Sbjct 84604 CCTTTGCCCAGCGTCTGGTCGCCTTTGCCGCTGTGGAAGGTATCTTCTTCTCCGGCTCCT 84545 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 || | | || | ||| | |||||||| ||||||||||| ||||| |||||| || | Sbjct 84544 TCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTTACCTTCTCCAACG 84485 Query 65189 AACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC---CGTGGAGCTCTTCAAGA 65245 ||||||| ||||| || ||||| | ||| || ||||| | || |||| || Sbjct 84484 AACTTATCTCCCGGGACGAGGGCATGCACACCGACTTTGCGTGCCTGCTGCTC-TCGCAC 84426 Query 65246 CTTTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGA 65305 ||| | | | ||| | | ||| |||||| |||||| | ||||| || ||| Sbjct 84425 CTTAAC--CACCGCCCCTCAAAGGAACTTATCCAGGCCATCATCGTCGAGGCCGTCCAGA 84368 Query 65306 TTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGA 65365 | ||| ||| ||| || || || ||||| | ||| | || |||||||| || Sbjct 84367 TCGAGCAAGAATTCCTCACCGAGGCGCTCCCCGTTGCTCTACTGGGCATGAACTCGAAGC 84308 Query 65366 AGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCAC 65425 ||| |||||||||||| || | || || || | |||| |||| | | Sbjct 84307 TCATGAAGCAGTACATTGAGTTCGTTGCCGACCGGCTGTT--GGTAAGTATGGGTAACCC 84250 Query 65426 CCATT--TGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAA 65483 | | | || | | ||||| |||||||||||||| ||||| || | || || Sbjct 84249 GAAGTACTACAAGGTCACCAATCCGTTTGACTTTATGGAGAACATCTCTCTAGCGGGCAA 84190 Query 65484 GACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 |||||| ||||| ||||||||||| || ||||| Sbjct 84189 GACCAATTTCTTCGAGAAGCGAGTGGGTGACTA 84157 >seq69 Length=644404 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 27862 TCAAGGACAAGTTGTGCGATGCGATCCCCTTTCTTTACCTCAAAGTCTTTGTCTCCGTGA 27921 |||||||| | ||||||||| || || || | ||| |||||| |||| |||| | | Sbjct 381023 TCAAGGACTAATTGTGCGATTCGTTCTCCCTGCTTCACCTCATAGTCGGTGTCACTGAAG 381082 Query 27922 TTGAAGAGAACGACTTTGACTTCACCTGTATAGTCGGGATCAATAACACCCGCACCAACT 27981 ||||| | | ||||||||||| ||| | ||||||| |||||| ||||| || || Sbjct 381083 TTGAACAACAATACTTTGACTTCTCCTCTGTAGTCGGCATCAATCACACCTGCGCCTGTG 381142 Query 27982 TGAATACCATGCTTCACAGCGAGACCGGATCGTGGTGCAACACGACCATA 28031 | || |||||| ||||| || || ||||| || ||||| ||||| Sbjct 381143 TCGATGAAATGCTTTGACGCGAGTCCTGAGCGTGGAGCTACACGCCCATA 381192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596567981804960