Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq85 118 3e-21 seq12 105 2e-17 seq123 100 8e-16 >seq85 Length=245923 Score = 118 bits (130), Expect = 3e-21 Identities = 255/374 (68%), Gaps = 12/374 (3%) Strand=Plus/Minus Query 133289 GGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAAT 133348 || ||||| ||| | |||||||||| ||||||||| | ||||| ||||||||| Sbjct 84812 GGCGAAGTCCAAGTCCCCGAAGCCCGCTGCTTTTATGGCTTCCAGATCATGATGGAAAAC 84753 Query 133349 ATCCATTCTATCACATATTCT-ACT-CTAATTGATACTTACATCAAAGATACCGTCCAGA 133406 ||||| | | || | || ||| || ||||| || ||||| ||||| | || | Sbjct 84752 ATCCA--CAGCGAAATGTACTCACTTCTCATTGACACATACATTAAAGAGCCAAAGCAAA 84695 Query 133407 AGCACAAACTATTCAACGCCATTAGCGA---ATTTCCTTGTATTAAAAAGAAATCTGACT 133463 || | || ||| ||||||| ||| | ||||||| |||| ||||||| |||| | Sbjct 84694 GACAATACCTCTTCGACGCCAT---CGATACAATTCCTTGCATTAGAAAGAAAGCTGAAT 84638 Query 133464 GGGCTATTAAATGGATC-CAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTT 133522 ||||| | ||||| ||| | || || | | ||||| ||||| || || ||| Sbjct 84637 GGGCTCTCCGCTGGATTTCAGATCGAGAGTCC-ACCTTTGCCCAGCGTCTGGTCGCCTTT 84579 Query 133523 GCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAG 133582 || | || || || || || ||| || | ||| ||| || || ||||| || ||| Sbjct 84578 GCCGCTGTGGAAGGTATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGGCTCAAGAAG 84519 Query 133583 CGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTT 133642 || ||| | | || || || || || ||||||||||| || ||||||||| | Sbjct 84518 CGAGGTCTCATGCCCGGCCTTACCTTCTCCAACGAACTTATCTCCCGGGACGAGGGCATG 84459 Query 133643 CACACCGAATTTGC 133656 |||||||| ||||| Sbjct 84458 CACACCGACTTTGC 84445 >seq12 Length=749661 Score = 105 bits (116), Expect = 2e-17 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| || |||||||| || ||| || |||||||||||||| ||||| | |||||| | Sbjct 276329 CTGTATGTAACCAGTCTCAGCTGTCTTGACAGCTGTATCAATCAGACCTTCTCGACCAGC 276388 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||| || |||||||| | ||| ||| || || | || ||||| |||| | ||| Sbjct 276389 CATGGCGTGGAAGAAAAATTCTGGTGGTGTAAGACCACGAAGGTAGGAGTTCTCGATGAA 276448 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777 |||||| | | | ||||| | |||| ||| | ||||||||||| || | || | Sbjct 276449 ACCACGAGACGCTGGCGAGTAGTCGTCCTTAGAAAAGTGTGGCAATGTGCGAAACTTGAA 276508 Query 302778 GCCGTATGGGATACGCTTTCCATCAACG 302805 || | ||||||||||| || || ||| Sbjct 276509 TCCAAAAGGGATACGCTTGCCCTCGACG 276536 Score = 89.7 bits (98), Expect = 2e-12 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 252562 ATACCAAGCGCCTGCTTTCCCATAGCACTCTGGTAAGTATTTCTGGGAGACTGATTGTTT 252621 || || | ||| ||||| ||||||||| ||||||||| |||| || |||||||||| Sbjct 331539 ATGCCCATCGCTTGCTTACCCATAGCAGACTGGTAAGTGTTTCGAGGTGACTGATTGTGG 331598 Query 252622 TCCGGGAAAGGAATGCATGATGCTACA-ACACCGAAGATAGTGCTTGGGTGAATTTCACA 252680 || ||||| |||||| || || || || || | ||| | ||||||||||||||||| Sbjct 331599 TCAGGGAAGGGAATG-ATACTGGCGCATACGCCAAGGATCATACTTGGGTGAATTTCACA 331657 Query 252681 GTG 252683 ||| Sbjct 331658 GTG 331660 Score = 84.2 bits (92), Expect = 6e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 233271 TAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCAT 233330 ||||||||||||| ||||| ||||||||||||||||| |||| || |||||||| || Sbjct 330448 TAGCACCGTGAGCTATCATGCAATCACGTTCCATTTCTCCAAATCGGAGACCACCGTCTC 330507 Query 233331 TTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACC-CTGAGCACGATAA 233389 || | |||| ||| | ||| ||||| |||| | | || || ||| || || || Sbjct 330508 GTGCACGGCCCTCGACCGGTTGGCGAGTCAAAATTTGTGTCGGGCCTCTG-GCTCGGGAA 330566 Query 233390 TTAATTTTATCTTTAACCATATG 233412 | ||||| || | |||||| || Sbjct 330567 TGGATTTTGTCATCAACCATGTG 330589 >seq123 Length=109856 Score = 100 bits (110), Expect = 8e-16 Identities = 605/956 (63%), Gaps = 23/956 (2%) Strand=Plus/Minus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCAC 155646 ||| ||| |||| ||| || || || ||| | | || |||| || | || || Sbjct 48298 CAACAGAAGCCAAATTGCAGACGGCGACCTCGTCAGGGGCGGTGTACTCAATGATTTCTG 48239 Query 155647 AGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAG 155706 ||||| ||| || |||||||||||| || |||||||| ||| ||| ||||| || | Sbjct 48238 TGCACAAGTTGGAGGACTTGATGGTGCCCAAGTTCTTCTGATTACTTTTTCTGTTGCAGG 48179 Query 155707 CATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCC 155766 | |||||||| || ||| ||||| |||| ||||| |||| || |||| || || Sbjct 48178 CGTCCTTGTAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTCCAAGATGGCATACC 48119 Query 155767 AGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACA 155826 | | | | || || ||| || | || ||||||| |||||| ||| ||| Sbjct 48118 ACAACTTCTGTGCCTTGATTGTCTGTCGGCCTCGGCCTTCCTTCTCATACTTCTCGAACA 48059 Query 155827 GCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACA 155886 | | | | ||||||||||| || ||| | || || | | |||||| || | Sbjct 48058 GAGCCTCGAACTCCTCACCGTAGCAGTCAGATAAACCTGGAGCTTCGTTGGGGCAGAAGA 47999 Query 155887 GCGACCAAATT--TTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGC 155944 | | ||| | | || | | || |||| ||| || | ||| | ||| | ||| Sbjct 47998 GAGTCCAGTCTCCGTTTTTCTCA--ACCCGCTTCATGAACAGATCTGGAGTCCAGAGAGC 47941 Query 155945 ATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAA 156004 || || | || | || || || | ||||| |||||||| || | | | Sbjct 47940 GTAAAACAAATCACGAGCACGAACTTCTTCCTTTCCGTGGTTCTTCCGGAGGTTCAGCCA 47881 Query 156005 TTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCA---TTCCTCTT 156061 || | ||| | || ||||| || || | ||||| |||| || | || Sbjct 47880 CTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAACGGCAAAGGCACCAGGTCTCTTGTT 47821 Query 156062 GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACC 156121 ||| ||||| || || || |||||||| || | ||||| | |||||||| | || || Sbjct 47820 GCCGCCCTGGTCGACGTATCGAGCAGTATTGTCAAAGACTCGGAGCATAGGGACAAGGCC 47761 Query 156122 ATTGGAAGTGCCATTGGTTCC-GCGAATATGCGAACCAGATGAGCGAACATTATGAATAT 156180 || || ||||| || || || ||| |||| || |||| | |||| || || | | Sbjct 47760 GTTTGATGTGCCGTTTGTGCCTGCG-ATATAGGAGCCAGTCGCTCGAATTTTGTGGACGT 47702 Query 156181 GTAGTCCAATACCACCTGACCAT--TTAGAAATTTGAGCGCATTCCTTTACAGTATTGAA 156238 | ||||||||| || | ||| || || || ||||| ||||| |||| | | Sbjct 47701 TCAATCCAATACCGCCGG--CATTCTTTGAGATCATGGCGCAGGTCTTTAGCGTATCGTA 47644 Query 156239 AATACCTTCAATAGAATCATCTTCCA--TTGATAGTAGATAGCACGAACTTAATTGAGGT 156296 || || || || || || || | || | ||| ||| | || || | ||||| Sbjct 47643 GATTCCCTCGATCGAGTCCTCCTTCATGTCGAT-CAAGA-AACATGATGACATTTGAGCA 47586 Query 156297 CGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATA 156356 |||||| || || ||||| || || || | || || | || ||| | ||||| Sbjct 47585 TTTGGTGTGCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGTGAACATCTTCTGGGACATG 47526 Query 156357 TAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTC 156416 || ||||||||| | | |||||| | || || ||||| | | ||| || | | Sbjct 47525 AGATTGTATGTCTCAATGACCTTCTCGATATCTTCTCCATGAATGCCAACAGACACGCGC 47466 Query 156417 ATCCACATATGCTGAGGACGCTCTACAATCACTCC--ATCA-ATTCGCAGAAGGTATGCG 156473 ||| ||| ||||| || || | | || || | ||| ||| | ||||| |||| Sbjct 47465 ATCAGCATGTGCTGTGG--TCTTTCCCATGGCTTCTTGTCATATTTG-AGAAGATATGAT 47409 Query 156474 CGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTGTAATCAAT 156529 | |||||| || || || || ||||| | | |||||| |||| ||| |||| Sbjct 47408 CTTTCCAGTGTCTTGAAGCCAAAATAGTTGTAGTTAAAATCTCGGTCGTATACAAT 47353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471813507887129