Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq123 161 1e-33
seq85 123 3e-22
seq33 104 3e-16
>seq123
Length=109856
Score = 161 bits (178), Expect = 1e-33
Identities = 213/293 (73%), Gaps = 2/293 (1%)
Strand=Plus/Minus
Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121
|| |||||||||||| || || || | || |||||| |||||||| || || ||||||||
Sbjct 47817 GCCCTGGTCGACGTATCGAGCAGTATTGTCAAAGACTCGGAGCATAGGGACAAGGCCGTT 47758
Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181
|| |||||| ||||| || | |||| ||| | || || | ||||| || ||
Sbjct 47757 TGATGTGCCGTTTGTGCCTGCGATATAGGAGCCAGTCGCTCGAATTTTGTGGACGTTCAA 47698
Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241
|| || |||||||| ||| ||||| | ||||| || ||||| |||||||| ||
Sbjct 47697 TCCAATACCGCCGGCATTCTTTGAGATCATGGCGCAGGTCTTTAGCGTATCGTAGATTCC 47638
Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCA-CGAGAAAGCACGACGAGTTTTGCGGGTGCGCCG 1630300
|||||||||||| |||||||||| | | ||||| || || || |||| | | | |
Sbjct 47637 CTCGATCGAGTCCTCCTTCATGTCGATCAAGAAA-CATGATGACATTTGAGCATTTGGTG 47579
Query 1630301 TGCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATG 1630353
|||| || |||||||| ||||||| || ||||||| || | | ||||||
Sbjct 47578 TGCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGTGAACATCTTCTGGGACATG 47526
>seq85
Length=245923
Score = 123 bits (136), Expect = 3e-22
Identities = 178/250 (71%), Gaps = 1/250 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || ||||| ||| |||||| || |||||||||||| | || |||||
Sbjct 84148 GCCTTTTGGTAGTCACCCACTCGCTTCTCGAAGAAATTGGTCTTGCCCGCTAGAGAGATG 84207
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||||| |||| |||||||| ||| | || | |
Sbjct 84208 TTCTCCATAAAGTCAAACGGATTGGTGACCTTGTAGTACTTCGGGTTACCCATACTTACC 84267
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
| ||| |||||||| || ||||| |||||||| |||||| | ||||||||| |
Sbjct 84268 AACAGCCGGTCGGCAACGAACTCAATGTACTGCTTCATGAGCTTCGAGTTCATGCCCAGT 84327
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || || || |||| |||| | | || |||| |||||||| ||||||||||||||||
Sbjct 84328 AGAGCAACGGGGAGCGCCTCGGTGAGGAATTCTTGCTCGATCTGGACGGCCTCGACGATG 84387
Query 868931 ATCTGCCTGG 868940
|| ||||||
Sbjct 84388 AT-GGCCTGG 84396
Score = 116 bits (128), Expect = 5e-20
Identities = 112/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239
|| ||||| || ||| | ||||||| |||| |||||||||||||| || ||||||
Sbjct 84463 CCCTCGTCCCGGGAGATAAGTTCGTTGGAGAAGGTAAGGCCGGGCATGAGACCTCGCTTC 84522
Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299
|||||||| ||||||| | ||| ||| ||||| ||||| || || || |||||||||
Sbjct 84523 TTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATACCTTCCACAGCGGCAAAG 84582
Query 869300 CCGATGAGCCGCTCGGCAAAGGTG 869323
||| || |||| ||||||||||
Sbjct 84583 GCGACCAGACGCTGGGCAAAGGTG 84606
>seq33
Length=555369
Score = 104 bits (114), Expect = 3e-16
Identities = 98/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227
|| || ||| | ||||| || ||||| || || || ||||| | || ||||| ||||
Sbjct 142031 CTATTCGAGATCATCCTTGCGGCCAATTATCTTGATATCAAACAACTTCTCGACGTTGGT 142090
Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287
||||| |||| ||||||||||||||||||||||| || ||||| ||||| ||||| ||
Sbjct 142091 TGCAAAACTGTCGCCAACATGATCAAGGGCAAGTCTCCGGAGGAAATCCGGAAGACGTTC 142150
Query 1592288 AACAT 1592292
|| ||
Sbjct 142151 AATAT 142155
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107121391963789
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |