Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq123 161 1e-33 seq85 123 3e-22 seq33 104 3e-16 >seq123 Length=109856 Score = 161 bits (178), Expect = 1e-33 Identities = 213/293 (73%), Gaps = 2/293 (1%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||||||||| || || || | || |||||| |||||||| || || |||||||| Sbjct 47817 GCCCTGGTCGACGTATCGAGCAGTATTGTCAAAGACTCGGAGCATAGGGACAAGGCCGTT 47758 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 || |||||| ||||| || | |||| ||| | || || | ||||| || || Sbjct 47757 TGATGTGCCGTTTGTGCCTGCGATATAGGAGCCAGTCGCTCGAATTTTGTGGACGTTCAA 47698 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 || || |||||||| ||| ||||| | ||||| || ||||| |||||||| || Sbjct 47697 TCCAATACCGCCGGCATTCTTTGAGATCATGGCGCAGGTCTTTAGCGTATCGTAGATTCC 47638 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCA-CGAGAAAGCACGACGAGTTTTGCGGGTGCGCCG 1630300 |||||||||||| |||||||||| | | ||||| || || || |||| | | | | Sbjct 47637 CTCGATCGAGTCCTCCTTCATGTCGATCAAGAAA-CATGATGACATTTGAGCATTTGGTG 47579 Query 1630301 TGCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATG 1630353 |||| || |||||||| ||||||| || ||||||| || | | |||||| Sbjct 47578 TGCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGTGAACATCTTCTGGGACATG 47526 >seq85 Length=245923 Score = 123 bits (136), Expect = 3e-22 Identities = 178/250 (71%), Gaps = 1/250 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || ||||| ||| |||||| || |||||||||||| | || ||||| Sbjct 84148 GCCTTTTGGTAGTCACCCACTCGCTTCTCGAAGAAATTGGTCTTGCCCGCTAGAGAGATG 84207 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||||| |||| |||||||| ||| | || | | Sbjct 84208 TTCTCCATAAAGTCAAACGGATTGGTGACCTTGTAGTACTTCGGGTTACCCATACTTACC 84267 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 | ||| |||||||| || ||||| |||||||| |||||| | ||||||||| | Sbjct 84268 AACAGCCGGTCGGCAACGAACTCAATGTACTGCTTCATGAGCTTCGAGTTCATGCCCAGT 84327 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || |||| |||| | | || |||| |||||||| |||||||||||||||| Sbjct 84328 AGAGCAACGGGGAGCGCCTCGGTGAGGAATTCTTGCTCGATCTGGACGGCCTCGACGATG 84387 Query 868931 ATCTGCCTGG 868940 || |||||| Sbjct 84388 AT-GGCCTGG 84396 Score = 116 bits (128), Expect = 5e-20 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| || ||| | ||||||| |||| |||||||||||||| || |||||| Sbjct 84463 CCCTCGTCCCGGGAGATAAGTTCGTTGGAGAAGGTAAGGCCGGGCATGAGACCTCGCTTC 84522 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| ||||||| | ||| ||| ||||| ||||| || || || ||||||||| Sbjct 84523 TTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATACCTTCCACAGCGGCAAAG 84582 Query 869300 CCGATGAGCCGCTCGGCAAAGGTG 869323 ||| || |||| |||||||||| Sbjct 84583 GCGACCAGACGCTGGGCAAAGGTG 84606 >seq33 Length=555369 Score = 104 bits (114), Expect = 3e-16 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || || ||| | ||||| || ||||| || || || ||||| | || ||||| |||| Sbjct 142031 CTATTCGAGATCATCCTTGCGGCCAATTATCTTGATATCAAACAACTTCTCGACGTTGGT 142090 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 ||||| |||| ||||||||||||||||||||||| || ||||| ||||| ||||| || Sbjct 142091 TGCAAAACTGTCGCCAACATGATCAAGGGCAAGTCTCCGGAGGAAATCCGGAAGACGTTC 142150 Query 1592288 AACAT 1592292 || || Sbjct 142151 AATAT 142155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107121391963789