Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq154 154 1e-32 seq123 104 2e-17 >seq154 Length=71981 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || || || ||||| || || |||||||| ||| | | Sbjct 41246 ATGCAAATTTTTGTCAAAACTCTCACAGGCAAAACCATAACACTCGAAGTGGAATCATCT 41305 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| ||| | ||| ||||||||||| ||||| || || || || || Sbjct 41306 GATACCATCGATAACGTTAAGTCGAAA-ATCCAAGACAAGGAAGGTATTCCACCAGACCA 41364 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || |||||||| || || ||||||||||||||| ||| | |||||||||| || Sbjct 41365 GCAGCGGTTGATCTTCGCAGGCAAACAGCTGGAGGATGGTCGAACCTTGTCAGATTACAA 41424 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||| || || || ||||| ||| | ||| || ||||||| || ||| Sbjct 41425 CATTCAGAAAGAGTCTACACTGCACCTTGTGCTGAGATTGCGAGGTGGC 41473 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || ||| ||| Sbjct 40790 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAATCCAGT 40849 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| |||||||| || || || ||||| || || Sbjct 40850 GACACGATCGACAATGTCAAGAGCAAGATTCAAGACAAGGAGGGCATTCCTCCTGACCAG 40909 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| |||| || || || || ||||| || || | | | || || || ||| Sbjct 40910 CAACGTCTGATTTTCGCTGGTAAGCAGCTTGAAGACGGTCGCACCTTGAGCGACTACAAC 40969 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| || || ||||||||| | || | || || ||| Sbjct 40970 ATTCAGAAAGAATCAACCCTCCACTTGGTGCTCCGTCTCCGTGGCGGC 41017 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || ||||| || || ||||| | || || || | | Sbjct 41474 ATGCAAATTTTCGTGAAGACACTCACCGGCAAGACAATTACCTTGGAGGTTGAGAGCTCT 41533 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||||| ||||| || || || || || ||||| Sbjct 41534 GACACTATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATTCCGCCGGATCAG 41593 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||||||||||| || || ||||||| | | | || ||||| ||| Sbjct 41594 CAACGACTGATCTTTGCCGGAAAGCAATTGGAGGACGGTCGTACTCTTTCTGATTACAAC 41653 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| ||||| |||||||| | ||| | || || ||| Sbjct 41654 ATTCAGAAGGAGAGTACACTGCACTTGGTTCTCCGACTTCGGGGCGGC 41701 >seq123 Length=109856 Score = 104 bits (114), Expect = 2e-17 Identities = 541/852 (63%), Gaps = 41/852 (5%) Strand=Plus/Minus Query 139093 TTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTA 139152 ||||| || || || ||||| ||| || |||| || | ||||| | ||||| || Sbjct 48284 TTGCAGACGGCGACCTCGTCAGGGGCGGTGTACTCAATGATTTCTGTGCACAAGTTGGAG 48225 Query 139153 CACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGC 139212 ||||||| || || || || | ||||| ||||||| ||| || || || ||||| ||| Sbjct 48224 GACTTGATGGTGCCCAAGTTCTTCTGATTACTTTTTCTGTTGCAGGCGTCCTTGTAGAGC 48165 Query 139213 ATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAA-----GTCCC 139267 || | || | ||||| || || | ||| | ||| | |||| || || Sbjct 48164 ATGAATGGGTTTCCAGTCTCAGTCTGGGCCTCCAAGATGGCATACCACAACTTCTGTGCC 48105 Query 139268 TAGCTTGTATTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGA 139327 | | |||| | | | || ||| | ||| ||||| ||| | || | |||| Sbjct 48104 TTGATTGTCTGTCGGCCTCGGCC--TTCCTT---CTCATACTTCTCGAACAGAGCCTCGA 48050 Query 139328 ATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATA 139387 | ||||||||| |||||| | | | || | || || || | ||| | ||| Sbjct 48049 ACTCCTCACCGTAGCAGTCAGATAAACCTGGAGCTTCGTTGGGGCAGAAGAGAGTCCAGT 47990 Query 139388 CGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAAT 139447 | ||||| || || ||| ||||||||||||| ||| |||| | |||| | | ||||| Sbjct 47989 CTCCGTTTTTCTCAACCCGCTTCATGAACAGATCTGGAGTCCAGAGAGCGTAAAACAAAT 47930 Query 139448 CGCGCGC-----CTTCTTATCTTCCGAACCCATGTTACGTTTC--ATGTTAAGGAAATCA 139500 | || || |||||| ||||| || | | || | | ||| || | ||| Sbjct 47929 CACGAGCACGAACTTCTTCCTTTCCG------TGGTTC-TTCCGGAGGTTCAGCCACTCA 47877 Query 139501 AAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCC---TTTCCGTTTGCCA 139557 || || || |||||||| || || || || | ||| | || || | || ||||| Sbjct 47876 AAGACATCGGCGTGCCAGGGCTCAAGGTAAACGGCAAAGGCACCAGGTCTCTTGTTGCCG 47817 Query 139558 CCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTC 139617 || || ||||||| ||| ||| ||| | || || || | ||| || | || ||| | Sbjct 47816 CCCTGGTCGACGTATCGAGCAGTATTGTCAAAGACTCGGAGCATAGGGACAAGGCCGTTT 47757 Query 139618 GCTGTTCCGTTGGTG-CTACG-GATGGGA--CTGTTGCGAGCTCGGACGTCATGTACATT 139673 | ||| ||||| ||| || || || ||| | || ||||| | | || || || Sbjct 47756 GATGTGCCGTTTGTGCCTGCGATATAGGAGCCAGT----CGCTCGAATTTTGTGGACGTT 47701 Query 139674 GATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTATAT 139733 | || || |||||| || || || || | |||| || || ||||| || Sbjct 47700 CAATCCAATACCGCCGGCATTCTTTGAGATCATGGCGCAGGTCTTTAGCGTATCGTAGAT 47641 Query 139734 ACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTT 139793 || || ||| |||| ||| || || || ||||| || | ||| | ||| Sbjct 47640 TCCCTCGATCGAGTCCTCCTTCATGTCGATCAAGAAACATGATGACATTTGAG--CATTT 47583 Query 139794 CGTGCCGGCTGCA---AACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAA 139850 ||| | ||||| || || || || ||||| |||||||| | | ||||| | Sbjct 47582 GGTG-TGCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGTGAACATCTTCTGGGACATGAG 47524 Query 139851 TTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCAT 139910 | ||| || || ||| | || | ||||| ||| || || || ||||| || ||||| Sbjct 47523 ATTGTATGTCTCAATGACCTTCTCGATATCTTCTCCATGAATGCCAACAGACACGCGCAT 47464 Query 139911 CAGCATATGTTG 139922 |||||| || || Sbjct 47463 CAGCATGTGCTG 47452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896379652760