Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq154 107 2e-18 seq87 91.5 1e-13 >seq154 Length=71981 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||||||| | || ||||||||||| || ||||| ||| | Sbjct 41246 ATGCAAATTTTTGTCAAAACTCTCACAGGCAAAACCATAACACTCGAAGTGGAATCATCT 41305 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | || || ||| || ||||| ||||| | || || || Sbjct 41306 GATACCATCGATAACGTTAAGTCGAAAATCCAAGACAAGGAAGGTATTCCACCAGACCAG 41365 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | || | || || |||||||||||||||| |||| || | ||||||||| Sbjct 41366 CAGCGGTTGATCTTCGCAGGCAAACAGCTGGAGGATGGTCGAACCTTGTCAGATTACAAC 41425 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| ||||| ||||| ||||| | ||| | ||| ||||||| || Sbjct 41426 ATTCAGAAAGAGTCTACACTGCACCTTGTGCTGAGATTGCGAGGTGG 41472 >seq87 Length=330109 Score = 91.5 bits (100), Expect = 1e-13 Identities = 203/305 (67%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 34318 TCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGC 34377 |||||||| ||||| | || ||| |||| || || ||| |||||| || || || Sbjct 169668 TCAGTCTCGGGGTTCTTGCAGTCCTTGCACAGGACGAATTTGTTGATGAACCCGTCGAGA 169609 Query 34378 AGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAA 34437 ||||| ||||| |||| | ||| | ||||||| ||| |||| || | ||| | Sbjct 169608 GATTCCTGCAACTTGTCGGACTGGTGTGCTCCGTTGATGATCCATCGATCATCCTTGGGA 169549 Query 34438 TCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGA 34497 | | | || || || || || ||| | ||||| || || | ||| | ||| Sbjct 169548 TTGGTGTTGGTCTGAGCACCGAGTTCGAAGCCGAAATATTTGATGATGTAGGCTGGAGGA 169489 Query 34498 CGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCC 34557 ||| | || | || ||| | |||| ||| | | || || ||||| || |||||| Sbjct 169488 CGTGCCAGAGACTGGGCAACAGACGGCAAATTGGCAACAACGGTTTTGATACCATTGCCC 169429 Query 34558 TTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACA 34617 || ||||| | ||||| | |||| ||| |||||||||||||| | ||| || ||| Sbjct 169428 TTGCCTTCAATCTTGGACTGAAGGCGCTCCATCTTGTAGCGGTAGAAGGGGTCGGCGACA 169369 Query 34618 TTGCG 34622 | ||| Sbjct 169368 TCGCG 169364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412840508162981