Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq123 161 2e-33
seq85 147 3e-29
seq33 95.1 2e-13
>seq123
Length=109856
Score = 161 bits (178), Expect = 2e-33
Identities = 211/292 (72%), Gaps = 0/292 (0%)
Strand=Plus/Minus
Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596
|| ||||||||| || || || || | || |||||| |||||||| || |||||||||||
Sbjct 47817 GCCCTGGTCGACGTATCGAGCAGTATTGTCAAAGACTCGGAGCATAGGGACAAGGCCGTT 47758
Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656
|| |||||| ||||| || | |||| ||| | || || | ||||| || ||
Sbjct 47757 TGATGTGCCGTTTGTGCCTGCGATATAGGAGCCAGTCGCTCGAATTTTGTGGACGTTCAA 47698
Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716
|| || |||||||| ||| ||||| | ||||| | || ||||| |||||||| ||
Sbjct 47697 TCCAATACCGCCGGCATTCTTTGAGATCATGGCGCAGGTCTTTAGCGTATCGTAGATTCC 47638
Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776
|||||||||||| |||||||||| | || || || || || |||| | | ||
Sbjct 47637 CTCGATCGAGTCCTCCTTCATGTCGATCAAGAAACATGATGACATTTGAGCATTTGGTGT 47578
Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATG 2073828
||| ||||||||||| ||||||| || ||| || || |||||||||
Sbjct 47577 GCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGTGAACATCTTCTGGGACATG 47526
Score = 89.7 bits (98), Expect = 8e-12
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 2071819 GGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGTC 2071878
||||| ||||| | |||||| ||| || | || || ||| ||||| || |||
Sbjct 48008 GGGCAGAAGAGAGTCCAGTCTCCGTTTTTCTCAACCCGCTTCATGAACAGATCTGGAGTC 47949
Query 2071879 CACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGG 2071938
|| || ||||||| | ||| || || || || ||||| ||||||||||| |||
Sbjct 47948 CAGAGAGCGTAAAACAAATCACGAGCACGAACTTCTTCCTTTCCGTGGTTCTTCCGGAGG 47889
Query 2071939 TCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTG 2071998
| ||||| || | || ||||||||||| ||||| ||||| ||||||||| ||
Sbjct 47888 TTCAGCCACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAACGGCAAAGGCACCAGGT 47829
Query 2071999 CGCTTGCCGCCGCC 2072012
| |||| ||||||
Sbjct 47828 CTCTTGTTGCCGCC 47815
>seq85
Length=245923
Score = 147 bits (162), Expect = 3e-29
Identities = 234/331 (71%), Gaps = 11/331 (3%)
Strand=Plus/Plus
Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400
|| ||||| || ||| | ||||||| ||| |||||||||||||| || ||||||
Sbjct 84463 CCCTCGTCCCGGGAGATAAGTTCGTTGGAGAAGGTAAGGCCGGGCATGAGACCTCGCTTC 84522
Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460
|||||||| ||||||| ||| ||| ||||| ||||| || || || |||||||||
Sbjct 84523 TTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATACCTTCCACAGCGGCAAAG 84582
Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGT-TGATCCACTTCATCGCCCA 794519
|||| || |||| |||||| ||| | | ||| | | ||||| | |||||
Sbjct 84583 GCGACCAGACGCTGGGCAAAGGTG----GACTCTCGATCTGAAATCCAGCGGAGAGCCCA 84638
Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGG--TGGTCCTT- 794576
|| || || || || | | || | || ||||||||| |||||| | ||| ||
Sbjct 84639 TTCAGCTTTCTTTCTAATGCAAGGAATTGTATCGATGGCGTCGAAGAGGTATTGTCTTTG 84698
Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636
|| || || || | ||| ||||| ||||| || ||||| | || |||||||||
Sbjct 84699 CT---TTGGCTCTTTAATGTATGTGTCAATGAGAAGTGAGTACATTTCGCTGTGGATGTT 84755
Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667
||| || ||||||||||||||||||||||
Sbjct 84756 TTCCATCATGATCTGGAAGCCATAAAAGCAG 84786
Score = 132 bits (146), Expect = 8e-25
Identities = 187/259 (72%), Gaps = 3/259 (1%)
Strand=Plus/Plus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| || || ||||| ||| |||||| || |||||||||||| | |
Sbjct 84140 TGACACCAGCCTTTTGGTAGTCACCCACTCGCTTCTCGAAGAAATTGGTCTTGCCCGCTA 84199
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGC-ACCCG 794009
| ||||| |||||| | ||||| |||| | ||||| |||| | ||||
Sbjct 84200 GAGAGATGTTCTCCATAAAGTCAAACGGATTGGTGACCTTGTAGTACTTCGGGTTACCCA 84259
Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069
| ||| ||| |||||||| ||||| ||||||||||| |||||| | ||||
Sbjct 84260 TACTTACCAA-CAGCCGGTCGGCAACGAACTCAATGTACTGCTTCATGAGCTTCGAGTTC 84318
Query 794070 ATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129
||||| | || || ||||| |||| |||| ||| || |||| |||||||| |||||||
Sbjct 84319 ATGCCCAGTAGAGCAACGGGGAGCGCCTCGGTGAGGAATTCTTGCTCGATCTGGACGGCC 84378
Query 794130 TCGATGATGATCTGCCTGG 794148
|||| |||||| ||||||
Sbjct 84379 TCGACGATGAT-GGCCTGG 84396
>seq33
Length=555369
Score = 95.1 bits (104), Expect = 2e-13
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671
|||| |||||| | || || ||| | ||||| || ||||| || || || ||||| |
Sbjct 142014 AGGTTGACCAAGAAATGCTATTCGAGATCATCCTTGCGGCCAATTATCTTGATATCAAAC 142073
Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731
|| ||||| | || ||||| || || |||||| | |||||||||||||| || ||||
Sbjct 142074 AACTTCTCGACGTTGGTTGCAAAACTGTCGCCAACATGATCAAGGGCAAGTCTCCGGAGG 142133
Query 2035732 ACATCCGCAAGACCTTTAACAT 2035753
| ||||| ||||| || || ||
Sbjct 142134 AAATCCGGAAGACGTTCAATAT 142155
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916223316720263
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |