Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq123 161 2e-33 seq85 147 3e-29 seq33 95.1 2e-13 >seq123 Length=109856 Score = 161 bits (178), Expect = 2e-33 Identities = 211/292 (72%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || ||||||||| || || || || | || |||||| |||||||| || ||||||||||| Sbjct 47817 GCCCTGGTCGACGTATCGAGCAGTATTGTCAAAGACTCGGAGCATAGGGACAAGGCCGTT 47758 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 || |||||| ||||| || | |||| ||| | || || | ||||| || || Sbjct 47757 TGATGTGCCGTTTGTGCCTGCGATATAGGAGCCAGTCGCTCGAATTTTGTGGACGTTCAA 47698 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 || || |||||||| ||| ||||| | ||||| | || ||||| |||||||| || Sbjct 47697 TCCAATACCGCCGGCATTCTTTGAGATCATGGCGCAGGTCTTTAGCGTATCGTAGATTCC 47638 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 |||||||||||| |||||||||| | || || || || || |||| | | || Sbjct 47637 CTCGATCGAGTCCTCCTTCATGTCGATCAAGAAACATGATGACATTTGAGCATTTGGTGT 47578 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATG 2073828 ||| ||||||||||| ||||||| || ||| || || ||||||||| Sbjct 47577 GCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGTGAACATCTTCTGGGACATG 47526 Score = 89.7 bits (98), Expect = 8e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 2071819 GGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGTC 2071878 ||||| ||||| | |||||| ||| || | || || ||| ||||| || ||| Sbjct 48008 GGGCAGAAGAGAGTCCAGTCTCCGTTTTTCTCAACCCGCTTCATGAACAGATCTGGAGTC 47949 Query 2071879 CACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGG 2071938 || || ||||||| | ||| || || || || ||||| ||||||||||| ||| Sbjct 47948 CAGAGAGCGTAAAACAAATCACGAGCACGAACTTCTTCCTTTCCGTGGTTCTTCCGGAGG 47889 Query 2071939 TCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTG 2071998 | ||||| || | || ||||||||||| ||||| ||||| ||||||||| || Sbjct 47888 TTCAGCCACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAACGGCAAAGGCACCAGGT 47829 Query 2071999 CGCTTGCCGCCGCC 2072012 | |||| |||||| Sbjct 47828 CTCTTGTTGCCGCC 47815 >seq85 Length=245923 Score = 147 bits (162), Expect = 3e-29 Identities = 234/331 (71%), Gaps = 11/331 (3%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| || ||| | ||||||| ||| |||||||||||||| || |||||| Sbjct 84463 CCCTCGTCCCGGGAGATAAGTTCGTTGGAGAAGGTAAGGCCGGGCATGAGACCTCGCTTC 84522 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||||| ||| ||| ||||| ||||| || || || ||||||||| Sbjct 84523 TTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATACCTTCCACAGCGGCAAAG 84582 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGT-TGATCCACTTCATCGCCCA 794519 |||| || |||| |||||| ||| | | ||| | | ||||| | ||||| Sbjct 84583 GCGACCAGACGCTGGGCAAAGGTG----GACTCTCGATCTGAAATCCAGCGGAGAGCCCA 84638 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGG--TGGTCCTT- 794576 || || || || || | | || | || ||||||||| |||||| | ||| || Sbjct 84639 TTCAGCTTTCTTTCTAATGCAAGGAATTGTATCGATGGCGTCGAAGAGGTATTGTCTTTG 84698 Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636 || || || || | ||| ||||| ||||| || ||||| | || ||||||||| Sbjct 84699 CT---TTGGCTCTTTAATGTATGTGTCAATGAGAAGTGAGTACATTTCGCTGTGGATGTT 84755 Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 ||| || |||||||||||||||||||||| Sbjct 84756 TTCCATCATGATCTGGAAGCCATAAAAGCAG 84786 Score = 132 bits (146), Expect = 8e-25 Identities = 187/259 (72%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || ||||| ||| |||||| || |||||||||||| | | Sbjct 84140 TGACACCAGCCTTTTGGTAGTCACCCACTCGCTTCTCGAAGAAATTGGTCTTGCCCGCTA 84199 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGC-ACCCG 794009 | ||||| |||||| | ||||| |||| | ||||| |||| | |||| Sbjct 84200 GAGAGATGTTCTCCATAAAGTCAAACGGATTGGTGACCTTGTAGTACTTCGGGTTACCCA 84259 Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 | ||| ||| |||||||| ||||| ||||||||||| |||||| | |||| Sbjct 84260 TACTTACCAA-CAGCCGGTCGGCAACGAACTCAATGTACTGCTTCATGAGCTTCGAGTTC 84318 Query 794070 ATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 ||||| | || || ||||| |||| |||| ||| || |||| |||||||| ||||||| Sbjct 84319 ATGCCCAGTAGAGCAACGGGGAGCGCCTCGGTGAGGAATTCTTGCTCGATCTGGACGGCC 84378 Query 794130 TCGATGATGATCTGCCTGG 794148 |||| |||||| |||||| Sbjct 84379 TCGACGATGAT-GGCCTGG 84396 >seq33 Length=555369 Score = 95.1 bits (104), Expect = 2e-13 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671 |||| |||||| | || || ||| | ||||| || ||||| || || || ||||| | Sbjct 142014 AGGTTGACCAAGAAATGCTATTCGAGATCATCCTTGCGGCCAATTATCTTGATATCAAAC 142073 Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731 || ||||| | || ||||| || || |||||| | |||||||||||||| || |||| Sbjct 142074 AACTTCTCGACGTTGGTTGCAAAACTGTCGCCAACATGATCAAGGGCAAGTCTCCGGAGG 142133 Query 2035732 ACATCCGCAAGACCTTTAACAT 2035753 | ||||| ||||| || || || Sbjct 142134 AAATCCGGAAGACGTTCAATAT 142155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916223316720263