Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq102 122 6e-23 seq154 114 8e-21 seq43 89.7 3e-13 >seq102 Length=189570 Score = 122 bits (134), Expect = 6e-23 Identities = 140/186 (75%), Gaps = 8/186 (4%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 |||| |||||||| ||||| || || | || |||| ||||| |||||||| ||||| | Sbjct 7822 CCTTTTGAATGTTGTAGTCAGAGAGAGTTCGGCCATCTTCCAGCTGCTTTCCCGCGAAAA 7763 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| ||||||||||||| |||| | ||||||||| | | || || ||||| || Sbjct 7762 TCAATCGTTGCTGGTCTGGCGGGATACCCTCCTTGACCTGGATCTTGCTCTTGAC--AT- 7706 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| || || |||||| |||| ||| |||||||| ||||| ||||||||| Sbjct 7705 -TGTCGATTGTGTCTGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTT 7647 Query 34964 ACAAAG 34969 || ||| Sbjct 7646 ACGAAG 7641 >seq154 Length=71981 Score = 114 bits (126), Expect = 8e-21 Identities = 157/217 (72%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | || ||||||||||||||||| || || || || | || | || Sbjct 41685 AGAACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCAGAAAGAGTACGACCGTCC 41626 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||||||||| ||||||||||||||||| || |||| | ||||||||||| Sbjct 41625 TCCAATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGCGGAATACCCTCCTTGTCC 41566 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || || || || | ||||| ||| | ||| || || | ||| || Sbjct 41565 TGGATCTTGGACTTTAC--AT--TGTCGATAGTGTCAGAGCTCTCAACCTCCAAGGTAAT 41510 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || ||||| ||||| || || || |||||| Sbjct 41509 TGTCTTGCCGGTGAGTGTCTTCACGAAAATTTGCATG 41473 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| || ||||||||||| ||||| | | |||| | || Sbjct 41001 AGCACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCGTCT 40942 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || ||||| ||||| ||||||||||| | || | ||||||||||| Sbjct 40941 TCAAGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCT 40882 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | |||| ||| ||| ||||| |||| ||| |||||| Sbjct 40881 TGAATCTTGCTCTTGACATTGTCGATCGTGTCACTGGATTCGACCTCAAGGGTGATGGTC 40822 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| || ||||||||||| Sbjct 40821 TTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 40790 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || | ||| ||||| || ||||| | || ||| ||||||||||| || || || Sbjct 41472 CCACCTCGCAATCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGAC 41413 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | | || |||| ||||| || || || |||||||||| || ||||||||| | || Sbjct 41412 AAGGTTCGACCATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGGA 41353 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTC 34926 | || |||||||| | ||||| || || | ||||||| ||| | || Sbjct 41352 ATACCTTCCTTGTCTTGGATTTTCGACTTAAC----GTTATCGATGGTATCAGATGATTC 41297 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || | |||||||| || || ||||| || || ||||| || |||||| Sbjct 41296 CACTTCGAGTGTTATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCATG 41245 >seq43 Length=153456 Score = 89.7 bits (98), Expect = 3e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || ||||||||| ||||| ||||| ||| |||| |||| Sbjct 109512 AGTACCAGGTGTAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTAAGGGTGCGACCATCC 109453 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || |||||||| ||||||||||||| ||| ||||| || | || | ||||||||||| Sbjct 109452 TCGAGTTGCTTGCCGGCGAAGATCAATCGCTGCTGATCAGGTGGAATACCCTCCTTGTC 109394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325691938644323