Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq102 122 6e-23
seq154 114 8e-21
seq43 89.7 3e-13
>seq102
Length=189570
Score = 122 bits (134), Expect = 6e-23
Identities = 140/186 (75%), Gaps = 8/186 (4%)
Strand=Plus/Minus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
|||| |||||||| ||||| || || | || |||| ||||| |||||||| ||||| |
Sbjct 7822 CCTTTTGAATGTTGTAGTCAGAGAGAGTTCGGCCATCTTCCAGCTGCTTTCCCGCGAAAA 7763
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
||| ||||||||||||| |||| | ||||||||| | | || || ||||| ||
Sbjct 7762 TCAATCGTTGCTGGTCTGGCGGGATACCCTCCTTGACCTGGATCTTGCTCTTGAC--AT- 7706
Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| ||||| || || |||||| |||| ||| |||||||| ||||| |||||||||
Sbjct 7705 -TGTCGATTGTGTCTGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTT 7647
Query 34964 ACAAAG 34969
|| |||
Sbjct 7646 ACGAAG 7641
>seq154
Length=71981
Score = 114 bits (126), Expect = 8e-21
Identities = 157/217 (72%), Gaps = 8/217 (4%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | || ||||||||||||||||| || || || || | || | ||
Sbjct 41685 AGAACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCAGAAAGAGTACGACCGTCC 41626
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| |||||||||||| ||||||||||||||||| || |||| | |||||||||||
Sbjct 41625 TCCAATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGCGGAATACCCTCCTTGTCC 41566
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || || || || | ||||| ||| | ||| || || | ||| ||
Sbjct 41565 TGGATCTTGGACTTTAC--AT--TGTCGATAGTGTCAGAGCTCTCAACCTCCAAGGTAAT 41510
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
||||| || ||||| ||||| || || || ||||||
Sbjct 41509 TGTCTTGCCGGTGAGTGTCTTCACGAAAATTTGCATG 41473
Score = 113 bits (124), Expect = 3e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | ||| || ||||||||||| ||||| | | |||| | ||
Sbjct 41001 AGCACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCGTCT 40942
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| || ||||| ||||| ||||||||||| | || | |||||||||||
Sbjct 40941 TCAAGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCT 40882
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || ||||| | |||| ||| ||| ||||| |||| ||| ||||||
Sbjct 40881 TGAATCTTGCTCTTGACATTGTCGATCGTGTCACTGGATTCGACCTCAAGGGTGATGGTC 40822
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || || ||||| || |||||||||||
Sbjct 40821 TTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 40790
Score = 96.9 bits (106), Expect = 2e-15
Identities = 161/232 (69%), Gaps = 8/232 (3%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| || | ||| ||||| || ||||| | || ||| ||||||||||| || || ||
Sbjct 41472 CCACCTCGCAATCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGAC 41413
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
| | | || |||| ||||| || || || |||||||||| || ||||||||| | ||
Sbjct 41412 AAGGTTCGACCATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGGA 41353
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTC 34926
| || |||||||| | ||||| || || | ||||||| ||| | ||
Sbjct 41352 ATACCTTCCTTGTCTTGGATTTTCGACTTAAC----GTTATCGATGGTATCAGATGATTC 41297
Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| || | |||||||| || || ||||| || || ||||| || ||||||
Sbjct 41296 CACTTCGAGTGTTATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCATG 41245
>seq43
Length=153456
Score = 89.7 bits (98), Expect = 3e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||||||| | || ||||||||| ||||| ||||| ||| |||| ||||
Sbjct 109512 AGTACCAGGTGTAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTAAGGGTGCGACCATCC 109453
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| |||||||| ||||||||||||| ||| ||||| || | || | |||||||||||
Sbjct 109452 TCGAGTTGCTTGCCGGCGAAGATCAATCGCTGCTGATCAGGTGGAATACCCTCCTTGTC 109394
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325691938644323
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |