Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq154 123 2e-23 seq43 87.8 1e-12 >seq154 Length=71981 Score = 123 bits (136), Expect = 2e-23 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||| |||||||| || || || |||||||| |||||||| || || | ||| ||||||| Sbjct 41005 ACGGAGCACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCTCAA-GGTGCGAC 40947 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 || || || || || ||||| | |||| | |||||| || || ||||| ||||| | Sbjct 40946 CGTCTTCAAGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCT 40887 Query 29690 TGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 ||||||| ||| || | |||||| | || | |||||| ||| || ||||| || Sbjct 40886 TGTCTTG-AATCTTGCTCTTGACATTGTCGATCGTGTCACTGGATTCGACCTCAAGGGTG 40828 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || |||||||| | || || || || ||||||||||| Sbjct 40827 ATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCATTTT 40787 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||| || || || || || |||||||| ||||| | || || ||| Sbjct 41688 CGGAGAACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCAGAAAGAGTACGACCG 41629 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | ||| || || ||| | |||| || |||||||||||||||||||||||| ||| Sbjct 41628 TCCTCCAATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGCGGAATACCCTCCTTG 41569 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || ||| | || | ||||||||| || || || | || || Sbjct 41568 TCCTGGATCTTGGACTTTACATTGTCGATAGTGTCAGAGCTCTCAACCTCCAAGGTAATT 41509 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | || || || || || ||||| Sbjct 41508 GTCTTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 41474 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAGAATCATCGAGTTG 29642 ||||| || ||||| || || || || ||||| | ||| | | || || || ||||| Sbjct 41220 TGAAGAGTCGATTCCTTCTGGATATTGTAATCACTCAAAGTT-CGGCCGTCTTCCAGTTG 41162 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 || |||||| | || | || ||||| || || ||||||||||| || || || | ||| Sbjct 41161 CTTACCAGCAAAGATGAGTCGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATTTT 41102 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 |||||| | || | || || ||| || || || ||||| || || || ||||| Sbjct 41101 GCTCTTGACATTGTCGATGGTATCGGAAGACTCAACCTCGAGAGTGATTGTCTTACCAGT 41042 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||| |||||||| Sbjct 41041 CAATGTCTTCACAAAAATCTGCAT 41018 >seq43 Length=153456 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || || || || || || || ||||| || || || ||||||| | Sbjct 109515 CGTAGTACCAGGTGTAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTAAGGGTGCGACCA 109456 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || |||||||| ||||| || | ||||||| |||||||| || ||||||||||| ||| Sbjct 109455 TCCTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGCTGATCAGGTGGAATACCCTCCTTG 109396 Query 29692 TCT 29694 ||| Sbjct 109395 TCT 109393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385218181215597