Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq17 107 1e-17
seq12 100 2e-15
seq47 93.3 3e-13
>seq17
Length=466808
Score = 107 bits (118), Expect = 1e-17
Identities = 662/1048 (63%), Gaps = 18/1048 (2%)
Strand=Plus/Minus
Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500
|||||||||||||| | ||| || ||||| || || ||||| || |||| |||| |||
Sbjct 248048 ATACCATTGGCATCAACATCGAAGGTGACCTCGATCTGAGGAACACCTCGGGGAGCTGGT 247989
Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560
||||| || | | || | || || ||| || || || || || |||
Sbjct 247988 GGGATACCGGAGAGTTCGAACTTGCCGAGCAGATTGTTGTCCTTGGTTCGGGCACGCTCA 247929
Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT- 281619
|||||||| | || || || | | || || || || | || | ||| |||
Sbjct 247928 CCCTCGAAGACCTGAATGAGGACACCTGGCTGGTTGTCAGAGAAGGTAGAGAATG-TCTC 247870
Query 281620 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG-GTCATAATACCACCAG 281678
||| || || || || || ||||||| | || | || | ||||| | ||| || |
Sbjct 247869 GGACTTCTTGGTTGGGATGGTGGTGTTTCGCTTGATCA-ATGGAGTCATGACACCGCCTG 247811
Query 281679 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 281738
| || || | ||| | ||| || || | || || | || ||| || | | | ||
Sbjct 247810 CAGTCTCGATACCGATAGACAGTGGTGCAACGTCGAGCAG--CAAGATCTCGTTGGTTGA 247753
Query 281739 CATC-----AGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAG 281792
| || ||| | ||| |||||| |||| || || | |||||||| ||||| ||||
Sbjct 247752 CTTCGAAGAAGTATCTCCAGACAAGA-TAGCAGCCTGGACGGCAGCACCGTATGCGACAG 247694
Query 281793 CTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTT 281852
| ||||| || || | | | || | | || || ||||| |||| || | ||||
Sbjct 247693 CCTCATCGGGGTTGATCGACTTGTTGGGCTCCTTGCCGTTGAAGAAATCAGAGACGAGTT 247634
Query 281853 GTCTTACCT-TAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 281911
||| | | || || |||| || || ||||| || ||||| || || || ||
Sbjct 247633 -TCTGGATTCTTGGGATTCGAGTGGAACCACCAACCAAGACAATCTCGTGGACGGAAGAC 247575
Query 281912 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAG 281971
|| || | || | ||| | ||| ||||| || || | | ||| || | |
Sbjct 247574 TTGTCAATCTTGGCATCTCGGAGCACTCGCTCAACTGGCTCCATGGTGGATCTGAAAAGG 247515
Query 281972 TCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCG 282031
|| || | ||||| ||| |||| ||||| | | || | || || || ||
Sbjct 247514 TCCTGGCACAACTCTTCAAATCGGGCTCGAGTAATGGAGGTATAGAAGTCGATACCCTCA 247455
Query 282032 AACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGT 282091
| | || || | |||||| | || || | || || || || | || || || |||
Sbjct 247454 TATAGGGAGTCGATTTCAATAGATGTCTGTGCGGACGATGAGAGAGTTCGCTTGGCGCGT 247395
Query 282092 TCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAA-TCTGTTTTATA 282150
|| || || || | || | ||| | || ||| | | || || ||| | || |
Sbjct 247394 TCGCAAGCGGTTCGGAGACGTCGAAGAGCACGTGC-GTTGGAAGAAAGGTCTTTCTTGTG 247336
Query 282151 TTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCC 282210
||||||||||| || | ||| | | || || | || || || |||||||| ||
Sbjct 247335 CTTTCTCTTGAACTCGTTGACAAAGTGGTTGACGAGTCTGTTGTCGAAGTCTTCACCACC 247276
Query 282211 CAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAG 282270
||| | ||||| || | |||| | || | || | || ||||| | || ||| ||
Sbjct 247275 CAAGTGAGTATCACCGGCAGTAGACTTGACCTCAAAGATACCCTCTTCGATAGTCAACAG 247216
Query 282271 AGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG 282330
| ||||| ||| ||||| |||| ||||| || || || || || ||
Sbjct 247215 GGACACATCGAAGGTACCACCGCCCAAGTCAAAGATGAGGACGTTTCGCTCACCCTCAGT 247156
Query 282331 GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 282390
||||| || ||||| || || | ||||| || ||||| || || || || | | |||
Sbjct 247155 CTTTTTGTCGAGACCGTAGGCGATGGCAGCTGCGGTTGGCTCGTTGATGATCCGAAGAAC 247096
Query 282391 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 282450
|| | ||||| || || ||||| || ||||| ||||| || || || || || ||
Sbjct 247095 GTTCAAGCCAGCGATCAGACCAGCATCCTTGGTGGCCTGTCTCTGAGAGTCATTGAAGTA 247036
Query 282451 TGCAGGAACAGTAATAACGGCATCTGTT 282478
||| || |||||||| || |||| ||||
Sbjct 247035 TGCTGGGACAGTAATGACAGCAT-TGTT 247009
>seq12
Length=749661
Score = 100 bits (110), Expect = 2e-15
Identities = 79/95 (83%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192
|||||||||||||| | ||||||||||| |||||| | ||| |||||||| | || ||
Sbjct 276409 GAATTTTTCTTCCACGCCATGGCTGGTCGAGAAGGTCTGATTGATACAGCTGTCAAGACA 276350
Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAA 435227
||||| |||||||| || || |||| |||||||||
Sbjct 276349 GCTGAGACTGGTTACATACAGAGAAGACTTGTCAA 276315
>seq47
Length=319710
Score = 93.3 bits (102), Expect = 3e-13
Identities = 141/200 (71%), Gaps = 3/200 (2%)
Strand=Plus/Plus
Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334
|||||| || |||||||||| |||| | || | ||||| || || ||||| ||
Sbjct 4376 ACATCAAAAGTACCACCACCCAAATCATAGATCATGACATTTCGCTCCTTCTCTTGCTTG 4435
Query 282335 TTAT---CAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
| | || || || || | ||| || ||||| || || || ||||| | | ||
Sbjct 4436 CCAGATCCGAGGCCGTAGGCGATAGCGGCCGCAGTGGGCTCGTTGATAATACGGAGGACG 4495
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|||||||| || || ||| || ||||| |||||||||||||| ||||| || |||
Sbjct 4496 TTAAGACCGGCGATGGATCCGGCGTCTTTCGTGGCTTGTCTTTGATTGTCGTTGAAGTAT 4555
Query 282452 GCAGGAACAGTAATAACGGC 282471
|| ||||| || ||||||||
Sbjct 4556 GCTGGAACTGTGATAACGGC 4575
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740619746217042
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