Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq17 107 1e-17 seq12 100 2e-15 seq47 93.3 3e-13 >seq17 Length=466808 Score = 107 bits (118), Expect = 1e-17 Identities = 662/1048 (63%), Gaps = 18/1048 (2%) Strand=Plus/Minus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 |||||||||||||| | ||| || ||||| || || ||||| || |||| |||| ||| Sbjct 248048 ATACCATTGGCATCAACATCGAAGGTGACCTCGATCTGAGGAACACCTCGGGGAGCTGGT 247989 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || | | || | || || ||| || || || || || ||| Sbjct 247988 GGGATACCGGAGAGTTCGAACTTGCCGAGCAGATTGTTGTCCTTGGTTCGGGCACGCTCA 247929 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT- 281619 |||||||| | || || || | | || || || || | || | ||| ||| Sbjct 247928 CCCTCGAAGACCTGAATGAGGACACCTGGCTGGTTGTCAGAGAAGGTAGAGAATG-TCTC 247870 Query 281620 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG-GTCATAATACCACCAG 281678 ||| || || || || || ||||||| | || | || | ||||| | ||| || | Sbjct 247869 GGACTTCTTGGTTGGGATGGTGGTGTTTCGCTTGATCA-ATGGAGTCATGACACCGCCTG 247811 Query 281679 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 281738 | || || | ||| | ||| || || | || || | || ||| || | | | || Sbjct 247810 CAGTCTCGATACCGATAGACAGTGGTGCAACGTCGAGCAG--CAAGATCTCGTTGGTTGA 247753 Query 281739 CATC-----AGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAG 281792 | || ||| | ||| |||||| |||| || || | |||||||| ||||| |||| Sbjct 247752 CTTCGAAGAAGTATCTCCAGACAAGA-TAGCAGCCTGGACGGCAGCACCGTATGCGACAG 247694 Query 281793 CTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTT 281852 | ||||| || || | | | || | | || || ||||| |||| || | |||| Sbjct 247693 CCTCATCGGGGTTGATCGACTTGTTGGGCTCCTTGCCGTTGAAGAAATCAGAGACGAGTT 247634 Query 281853 GTCTTACCT-TAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 281911 ||| | | || || |||| || || ||||| || ||||| || || || || Sbjct 247633 -TCTGGATTCTTGGGATTCGAGTGGAACCACCAACCAAGACAATCTCGTGGACGGAAGAC 247575 Query 281912 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAG 281971 || || | || | ||| | ||| ||||| || || | | ||| || | | Sbjct 247574 TTGTCAATCTTGGCATCTCGGAGCACTCGCTCAACTGGCTCCATGGTGGATCTGAAAAGG 247515 Query 281972 TCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCG 282031 || || | ||||| ||| |||| ||||| | | || | || || || || Sbjct 247514 TCCTGGCACAACTCTTCAAATCGGGCTCGAGTAATGGAGGTATAGAAGTCGATACCCTCA 247455 Query 282032 AACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGT 282091 | | || || | |||||| | || || | || || || || | || || || ||| Sbjct 247454 TATAGGGAGTCGATTTCAATAGATGTCTGTGCGGACGATGAGAGAGTTCGCTTGGCGCGT 247395 Query 282092 TCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAA-TCTGTTTTATA 282150 || || || || | || | ||| | || ||| | | || || ||| | || | Sbjct 247394 TCGCAAGCGGTTCGGAGACGTCGAAGAGCACGTGC-GTTGGAAGAAAGGTCTTTCTTGTG 247336 Query 282151 TTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCC 282210 ||||||||||| || | ||| | | || || | || || || |||||||| || Sbjct 247335 CTTTCTCTTGAACTCGTTGACAAAGTGGTTGACGAGTCTGTTGTCGAAGTCTTCACCACC 247276 Query 282211 CAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAG 282270 ||| | ||||| || | |||| | || | || | || ||||| | || ||| || Sbjct 247275 CAAGTGAGTATCACCGGCAGTAGACTTGACCTCAAAGATACCCTCTTCGATAGTCAACAG 247216 Query 282271 AGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG 282330 | ||||| ||| ||||| |||| ||||| || || || || || || Sbjct 247215 GGACACATCGAAGGTACCACCGCCCAAGTCAAAGATGAGGACGTTTCGCTCACCCTCAGT 247156 Query 282331 GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 282390 ||||| || ||||| || || | ||||| || ||||| || || || || | | ||| Sbjct 247155 CTTTTTGTCGAGACCGTAGGCGATGGCAGCTGCGGTTGGCTCGTTGATGATCCGAAGAAC 247096 Query 282391 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 282450 || | ||||| || || ||||| || ||||| ||||| || || || || || || Sbjct 247095 GTTCAAGCCAGCGATCAGACCAGCATCCTTGGTGGCCTGTCTCTGAGAGTCATTGAAGTA 247036 Query 282451 TGCAGGAACAGTAATAACGGCATCTGTT 282478 ||| || |||||||| || |||| |||| Sbjct 247035 TGCTGGGACAGTAATGACAGCAT-TGTT 247009 >seq12 Length=749661 Score = 100 bits (110), Expect = 2e-15 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 |||||||||||||| | ||||||||||| |||||| | ||| |||||||| | || || Sbjct 276409 GAATTTTTCTTCCACGCCATGGCTGGTCGAGAAGGTCTGATTGATACAGCTGTCAAGACA 276350 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAA 435227 ||||| |||||||| || || |||| ||||||||| Sbjct 276349 GCTGAGACTGGTTACATACAGAGAAGACTTGTCAA 276315 >seq47 Length=319710 Score = 93.3 bits (102), Expect = 3e-13 Identities = 141/200 (71%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 |||||| || |||||||||| |||| | || | ||||| || || ||||| || Sbjct 4376 ACATCAAAAGTACCACCACCCAAATCATAGATCATGACATTTCGCTCCTTCTCTTGCTTG 4435 Query 282335 TTAT---CAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 | | || || || || | ||| || ||||| || || || ||||| | | || Sbjct 4436 CCAGATCCGAGGCCGTAGGCGATAGCGGCCGCAGTGGGCTCGTTGATAATACGGAGGACG 4495 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 |||||||| || || ||| || ||||| |||||||||||||| ||||| || ||| Sbjct 4496 TTAAGACCGGCGATGGATCCGGCGTCTTTCGTGGCTTGTCTTTGATTGTCGTTGAAGTAT 4555 Query 282452 GCAGGAACAGTAATAACGGC 282471 || ||||| || |||||||| Sbjct 4556 GCTGGAACTGTGATAACGGC 4575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740619746217042