Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq154 118 1e-21
seq85 111 2e-19
>seq154
Length=71981
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243
||| || || | ||| | || || || | || |||||||| || |||||||| |||||
Sbjct 41017 GCCGCCACGGAGACGGAGCACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCT 40958
Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303
|| |||| |||||| || || |||||||| | |||||||||||||| || |||||
Sbjct 40957 CAAGGTGCGACCGTCTTCAAGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGG 40898
Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363
||||| || ||||| ||| || || | | || | |||||| ||| ||| ||
Sbjct 40897 AATGCCCTCCTTGTCTTGAATCTTGCTCTTGACATTGTCGATCGTGTCACTGGATTCGAC 40838
Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|||| || | |||||||| |||| || || ||||| || |||||
Sbjct 40837 CTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 40790
>seq85
Length=245923
Score = 111 bits (122), Expect = 2e-19
Identities = 307/466 (66%), Gaps = 5/466 (1%)
Strand=Plus/Minus
Query 50274 ACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGC 50333
|| || ||| | ||| | || || |||||| || |||||| | || || ||||| |
Sbjct 84605 ACCTTTGCCCAGCGTCTGGTCGCCTTTGCCGCTGTGGAAGGTATCTTCTTCTCCGGCTCC 84546
Query 50334 TTTGCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAAC 50393
|| || |||| || | | || | ||| | ||||||||||| || || ||||
Sbjct 84545 TTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTTACCTTCTCCAAC 84486
Query 50394 GAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTGTTTGTACTACAATACG 50453
|| | || || || ||||| || |||||||| ||||||||||| || || | | ||
Sbjct 84485 GAACTTATCTCCCGGGACGAGGGCATGCACACCGACTTTGCGTGCCTG--CTGCTCT-CG 84429
Query 50454 CGCGTAAATGAAAAATTATCATACGAAACAATTTTGGACATGTTCAAAGAAGCCGTCGAC 50513
| | | || | ||| | ||| || || ||| || || |||||| |
Sbjct 84428 CACCTTAACCACCGCCCCTCAAAGGAACTTATCCAGGCCATCATCGTCGAGGCCGTCCAG 84369
Query 50514 ATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATGAACGCAGAC 50573
||||| |||| || |||| || || | ||||| || | ||||||||||| | |
Sbjct 84368 ATCGAGCAAGAATTCCTCACCGAGGCGCTCCCCGTTGCTCTACTGGGCATGAACTCGAAG 84309
Query 50574 ATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAGCTGGGACAACCG 50633
| ||| ||||||||||||| ||||| ||| | ||||| | |||| | |||
Sbjct 84308 CTCATGAAGCAGTACATTGAGTTCGTTGCCGACCGGCTGTTGGTAAGTATGGGTAACCCG 84249
Query 50634 AAATACTATAATG-CACGTAACCCCTTTCCGTTTATGAATAACATATCGTTGGAGGGCAA 50692
|| ||||| || | ||| || || ||| |||||| | ||||| || | | ||||||
Sbjct 84248 AAGTACTACAAGGTCAC-CAATCCGTTTGACTTTATGGAGAACATCTCTCTAGCGGGCAA 84190
Query 50693 AACAAACTTTTTCGAAAGACGTGTAGGCGAATACAAAATGTTTGGT 50738
|| || || ||||| | || || || || ||| ||| | ||||
Sbjct 84189 GACCAATTTCTTCGAGAAGCGAGTGGGTGACTACCAAAAGGCTGGT 84144
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 488542674824400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |