Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq154 158 2e-33 >seq154 Length=71981 Score = 158 bits (174), Expect = 2e-33 Identities = 166/216 (77%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||||| ||| ||||| ||||| ||||| ||||| |||||| | | ||| ||| Sbjct 41232 CGTAGAACTAGGTGAAGAGTCGATTCCTTCTGGATATTGTAATCACTCAAAGTTCGGCCG 41173 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| ||||| || ||||||||||| |||| || || || ||||| || || |||||| Sbjct 41172 TCTTCCAGTTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGGGAGGAATACCCTCCTTA 41113 Query 82716 TCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || || |||||| || ||||| || || ||||| || || || || | ||| || Sbjct 41112 TCCTGGAT-TTTGCTCTTGACATTGTCGATGGTATCGGAAGACTCAACCTCGAGAGTGAT 41054 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||| ||||| ||||| |||||||| Sbjct 41053 TGTCTTACCAGTCAATGTCTTCACAAAAATCTGCAT 41018 Score = 129 bits (142), Expect = 1e-24 Identities = 161/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||| || || ||||||||||| || || || || | | | ||| Sbjct 41005 ACGGAGCACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAGGTGCGACC 40946 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| || || || ||||| || || || | ||| || || ||||| || || ||||| Sbjct 40945 GTCTTCAAGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTT 40886 Query 82715 ATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773 ||||||||| ||||| || ||||| || ||||| ||| | | ||| || || | || | Sbjct 40885 GTCTTGAATC-TTGCTCTTGACATTGTCGATCGTGTCACTGGATTCGACCTCAAGGGTGA 40827 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | |||||||| |||| ||||| || || ||||||||| Sbjct 40826 TGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCATT 40789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981824470213563