Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq123 223 3e-53 seq85 185 8e-42 seq154 109 5e-19 >seq123 Length=109856 Score = 223 bits (246), Expect = 3e-53 Identities = 1181/1859 (64%), Gaps = 59/1859 (3%) Strand=Plus/Minus Query 147951 GTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGAC 148010 || || |||||||||||||| |||||||| ||||| ||| | | ||||| || Sbjct 49175 GTTCGAAGATAGTACATGCCAGTCTTGAGACCCATTTTCCAGCCAGCGAAGTGCATAGAA 49116 Query 148011 GACATGAGCGTGTAC---GTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTCA 148067 | ||| | || | || || | | || | | || |||||||| ||| ||| Sbjct 49115 G---TGATCTTGCCCATGGTTGGTTCCTTCAGATGAATGTTCAACGACTGTGACTGATCA 49059 Query 148068 ATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTC---ATCTCCCAG 148124 ||||| || || || ||||||||||| | |||| | | || ||| ||||||||| Sbjct 49058 ATGAAGGCACCTCGATCAGCGGCCATCTGGATGA-TAG--TTCTCTGAGAGATCTCCCAG 49002 Query 148125 GCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCG--CTGCACCGAGC 148182 | |||||||| || ||||| | |||||| | | | || ||| | || | Sbjct 49001 ACAGTCTTGTAGAGTGCTTTGATGTCGGTTGGAATGT--TTGGTACGTTCTGAATTGAAC 48944 Query 148183 CGCGGTGCGCAAAAAT-CTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGG 148241 ||| | |||| || ||| || ||| | ||||| | ||| || || | || Sbjct 48943 CGCCCTCGGCAATGATTCTG-TTCTTCATGTTGTCCGACCACAGGCCAAGATCAACGAGA 48885 Query 148242 TCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATAC 148301 || | || ||| | |||| || |||||||| ||||| || | ||| || || || Sbjct 48884 TCTTTGAGCAGCCATGGATTGACGACCTGAAATTCGCCTGCTAACACACGACGGGAGTAG 48825 Query 148302 ACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCC 148361 | |||| ||| | || || || | || || |||||||| ||||||| || | || Sbjct 48824 ATGTTGGATGTATATGGCTCGAAGCATTCATTATTGCCCAATATCTGCGACGTAGAGGCG 48765 Query 148362 GTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTC 148421 || |||||| || || || || || || || | ||| | || ||| ||| Sbjct 48764 GTCGGCATGGGTGCGACAAGAAGAGAATTTCGAACACCATACTGAGCAATCTTGGCTTTC 48705 Query 148422 AGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATG 148481 | ||| |||||||||| || | ||||||| ||| | ||||||||| || Sbjct 48704 AAGGCCTCCCAGTCCCAAAGGTCTGTTGGTGTCAGACCCCAGAGGTCGTACTGTAGCTGA 48645 Query 148482 CCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCG 148541 || | | ||| |||||| || | ||| || || | || ||| || || Sbjct 48644 CCTTGAGAAATGGGCGAGCCCTCATAGGTTTCGTATGGACCAAGTTCCTTCGCAAGGTCA 48585 Query 148542 CAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCC 148601 || || || || ||| ||| || |||||| ||||| |||||||| | Sbjct 48584 CATGAAGCTGTCAGAGCTGCGTGGTAGATAGTCTCGAATATTTGAATGTTGAGCTGTCTT 48525 Query 148602 GCCGACTCGCTT---TCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGT 148658 || ||| ||| |||||| | || | || || || |||||||| || Sbjct 48524 GCT---TCGGGAGAATCGAACGGCAGTCTAAGGGCAAGGAAAGCATCAGCAAGGCCTTGA 48468 Query 148659 ACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAG 148718 || || | |||||||| |||||| | | |||| | ||| | || || ||| Sbjct 48467 ACACCAAGACCAATGGGTCGGTGTCTGAAGTTGCTCTTTCTCGCTTCCGGGACGGGGTAG 48408 Query 148719 TGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGC 148778 | |||| ||||||||||||| || || || |||| | | | |||| Sbjct 48407 TAGTTGATCTCGATGATCTTGTTCAGGTTCTTAGTCATGACCTGGATGACCTCGTGCAGT 48348 Query 148779 AATTCAAAATCGTACTTGTCATCTACGA--TG--CATCG---GTT--CACGGCGATAGAG 148829 |||| || || ||| | || ||| || || || | | || || | ||| Sbjct 48347 CGGCCAAAGTCATA-TTGAC--CTTCGACTTGGTCAACGAAAGATGGCAAAGCAACAGAA 48291 Query 148830 GCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGA 148889 || | |||||| ||||| ||| || |||||| ||||||| | ||| || | ||||| Sbjct 48290 GCCAAATTGCAGACGGCGACCTCGTCAGGGGCGGTGTACTCAATGATTTCTGTGCACAAG 48231 Query 148890 TTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTG 148949 ||| | | ||||| ||||| |||||| ||||| || || |||||||| ||||||||| Sbjct 48230 TTGGAGGACTTGATGGTGCCCAAGTTCTTCTGATTACTTTTTCTGTTGCAGGCGTCCTTG 48171 Query 148950 TACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG--AACCGATGCAGGT 149007 || |||||| | || ||||| || ||| | |||| ||| | | | || | Sbjct 48170 TAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTCCAAGATGGCATACCA--CAACT 48113 Query 149008 CCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTA--TAAAGTATACAGCCG 149065 ||| || | | ||| | || || |||| ||| || | | | | |||| Sbjct 48112 TCTGTGCCTTGATTGTCTGTCGGCCTCGGCCTTCCTTCTCATACTTCTCGAACAGAGCC- 48054 Query 149066 CTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGA 149125 |||||| |||| |||||||| || | ||| || | || ||||| | ||| | Sbjct 48053 -TCGAACTCCTCACCGTAGCAGTCAGATAAACCTGGAGCTTCGTTGGGGCAGAAGAGAGT 47995 Query 149126 CCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACAT 149185 ||| | |||| | || |||||||| |||||||| || |||||| ||||| | Sbjct 47994 CCAGTCTCCGTTTTTCTCAACCCGCTTCATGAACAGATCTGGAGTCCAGAGAGCGTAAAA 47935 Query 149186 GAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAA 149245 | || || || ||||| || ||| || ||||| ||| | || || Sbjct 47934 CAAATCACGAGCACGAACTTCTTCCTTTCCGTGGTTCTTCCGGAGGTTCAGC-CACTCAA 47876 Query 149246 T-ATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCC------CTTGCGCTTGC 149298 | || |||||||| ||||||| ||| || || | || || |||| |||| Sbjct 47875 AGACATCGGCGTGCCAGGGCTCAAGGTAAACGGCAAAGGCACCAGGTCTCTTG---TTGC 47819 Query 149299 CGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCAC 149358 ||||||||||||||| || | | |||| ||| ||||| | |||||| ||| ||| Sbjct 47818 CGCCCTGGTCGACGTATCGAGCAGTATTGTCAAAGACTCGGAGCATAGGGACAAGGCCGT 47759 Query 149359 TGGCAGTGCCGTTAGTAGA-GCTA-ATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTT 149416 | | |||||||| || || | || || ||| |||||| | |||||| ||||| Sbjct 47758 TTGATGTGCCGTTTGTGCCTGCGATATAGGA--GCCAGTCGCTCGAATTTTGTGGACGTT 47701 Query 149417 GACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGAT 149476 | || || |||||| | | ||||||||| |||||| ||||| |||||| Sbjct 47700 CAATCCAATACCGCCGGCATTCTTTGAGATCATGGCGCAGGTCTTTAGCGTATCGTAGAT 47641 Query 149477 GCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACG 149536 |||||||| ||| ||||||| | || || || || ||||||| | | | Sbjct 47640 TCCCTCGATCGAGTCCTCCTTCATGTCGATCAAGAAACATGATGACATTTGAGCATTTGG 47581 Query 149537 CGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTC 149596 ||||| || ||| | |||||| |||||||| || |||||| ||| | | Sbjct 47580 TGTGCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGTGAACATCTTCTGGGACATGAGATT 47521 Query 149597 GTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAG 149656 ||| | ||| | || || || || || ||||| ||||| | | ||||||||||| Sbjct 47520 GTATGTCTCAATGACCTTCTCGATATCTTCTCCATGAATGCCAACAGACACGCGCATCAG 47461 Query 149657 CATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAG 149716 ||| ||||| |||| ||| || || || |||||| | || |||| || Sbjct 47460 CATGTGCTGTGGTCTTTCCCATGGCTTCTTGTCATATTTGAGAAGATATGATCTTTCCAG 47401 Query 149717 TGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTCGA 149775 ||||||| ||||||| || ||||||| ||| || ||| ||| ||||||| | || || Sbjct 47400 TGTCTTGAAGCCAAAATAGTTGTAGTTAAAATCTCGGTCGTATACAATGGCAGAGTTGA 47342 >seq85 Length=245923 Score = 185 bits (204), Expect = 8e-42 Identities = 319/458 (70%), Gaps = 13/458 (3%) Strand=Plus/Plus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 ||| || || || || ||||| || || || || |||||| | | || ||||| | ||| Sbjct 84156 GTAGTCACCCACTCGCTTCTCGAAGAAATTGGTCTTGCCCGCTAGAGAGATGTTCTCCAT 84215 Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCA-ACTGTACGAGCAGTC 120472 ||| || ||||| ||| | | || |||| ||||| | |||| ||| ||| | ||| | Sbjct 84216 AAAGTCAAACGGATTGGTGACCTTGTAGTACTTCGGGTTACCCATACT-TACCAACAGCC 84274 Query 120473 GGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCA 120532 |||| || || ||||||||||||| |||| || || |||||||||||| | || | Sbjct 84275 GGTCGGCAACGAACTCAATGTACTGCTTCATGAGCTTCGAGTTCATGCCCAGTAGAGCAA 84334 Query 120533 CCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGA 120592 | || | |||| |||| || || | ||| || | || ||||| || ||||| Sbjct 84335 CGGGGAGCGCCTCGGTGAGGAATTCTTGCTCGATCTGGACGGCCTCGACGATGATGGCCT 84394 Query 120593 GCATA-GTG---TGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCA 120648 | ||| || | | |||| || | | |||| | | | |||||||||| Sbjct 84395 GGATAAGTTCCTTTGAGGGGCGG--TGGTTAAGGTGCGAGAGCAG-----CAGGCACGCA 84447 Query 120649 AAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGC 120708 ||||| ||||||| ||||||||| || || || || |||||| || || ||||||||| Sbjct 84448 AAGTCGGTGTGCATGCCCTCGTCCCGGGAGATAAGTTCGTTGGAGAAGGTAAGGCCGGGC 84507 Query 120709 ATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCC 120768 |||| ||| | |||||| |||| |||| ||| ||| ||| || ||||| | || Sbjct 84508 ATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATACCT 84567 Query 120769 TCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGT 120806 ||||| |||||||||||||| |||| ||| || || Sbjct 84568 TCCACAGCGGCAAAGGCGACCAGACGCTGGGCAAAGGT 84605 >seq154 Length=71981 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || |||||||| || || ||| | ||||| ||||| ||||| Sbjct 41442 GTAGACTCTTTCTGAATGTTGTAATCTGACAAGGTTCGACCA-TCCTCCAGCTGTTTGCC 41384 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | |||||||||||| || || || ||||||||||| ||| || ||| Sbjct 41383 TGCGAAGATCAACCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGGATTTTCGACTT 41324 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || || | | ||||| |||| || | ||||||||| || ||||| Sbjct 41323 AACGTTATCGATGGTATCAGATGATTCCACTTCGAGTGTTATGGTTTTGCCTGTGAGAGT 41264 Query 133643 TTTTACGAAAATCTGCATG 133661 ||| || ||||| |||||| Sbjct 41263 TTTGACAAAAATTTGCATG 41245 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || || || ||||| ||||||||||| | || || || || || || || ||||| | Sbjct 41214 GTCGATTCCTTCTGGATATTGTAATCACTCAAAGTTCGGCCG--TCTTCCAGTTGCTTAC 41157 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| ||||||||||||||||| || || ||||| || ||| || || Sbjct 41156 CAGCAAAGATGAGTCGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATTTTGCTCT 41097 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | || |||| | ||| || |||| |||| || || || |||| | Sbjct 41096 TGACATTGTCGATGGTATCGGAAGACTCAACCTCGAGAGTGATTGTCTTACCAGTCAATG 41037 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || |||||||||||| Sbjct 41036 TCTTCACAAAAATCTGCATG 41017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483419488721080