Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq154 102 5e-17
>seq154
Length=71981
Score = 102 bits (112), Expect = 5e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||||| ||| | | ||| | || || || |||||| || ||||||||||| ||
Sbjct 41472 CCACCTCGCAATCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGAC 41413
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| || || | || |||| ||||| || || || ||||| |||||||| ||| | ||
Sbjct 41412 AAGGTTCGACCATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGGA 41353
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| |||||| ||||| |||||| | | ||| | || | ||| || |||||||||
Sbjct 41352 ATACCTTCCTTGTCTTGGATTTTC-GACTTAACGTTATCGATGGTATCAGATGATTCCAC 41294
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | || || ||||| ||||| | ||||| ||||| || |||||
Sbjct 41293 TTCGAGTGTTATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCAT 41246
Score = 96.9 bits (106), Expect = 2e-15
Identities = 91/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600
||||| || || || ||||| || || ||||||||||| || || || || |||| |||
Sbjct 41682 ACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCAGAAAGAGTACGACCGTCCTCC 41623
Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656
||||| ||||||||||| |||| || |||||||| |||| | ||| || |||||
Sbjct 41622 AATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGCGGAATACCCTCCTTGTC 41567
Score = 82.4 bits (90), Expect = 5e-11
Identities = 151/218 (69%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593
||| | |||||| || || || ||||| || |||||||| ||| | ||||| |
Sbjct 41005 ACGGAGCACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAGGTGCGACC 40946
Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653
||| || | || || || || ||||||| ||| ||||| || | || | || || ||
Sbjct 40945 GTCTTCAAGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTT 40886
Query 33654 GTCGGCAATTTT-CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTG 33711
||| ||| || || || |||| ||| | ||||| || ||||| || |||| |||
Sbjct 40885 GTCTTGAATCTTGCTCTTG--ACATTGTCGATCGTGTCACTGGATTCGACCTCAAGGGTG 40828
Query 33712 ATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || || || || | || || || |||||||||||
Sbjct 40827 ATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 40790
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328703130680640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |