Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq154 122 2e-22 seq123 87.8 4e-12 >seq154 Length=71981 Score = 122 bits (134), Expect = 2e-22 Identities = 156/214 (73%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| |||||||| ||||| || || | ||||||||| ||||| || | Sbjct 41254 TTTTGTCAAAACTCTCACAGGCAAAACCATAACACTCGAAGTGGAATCATCTGATACCAT 41313 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| || ||| || || ||||| || ||||| ||| || ||| || | | Sbjct 41314 CGATAACGTTAAGTCGAAAATCCAAGACAAGGAAGGTATTCCACCAGACCAGCAGCGGTT 41373 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 |||||||| || || ||| |||| ||||| | || ||| | ||||||||| | ||||| Sbjct 41374 GATCTTCGCAGGCAAACAGCTGGAGGATGGTCGAACCTTGTCAGATTACAACATTCAGAA 41433 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||||||| || |||||||| ||||| | ||| Sbjct 41434 AGAGTCTACACTGCACCTTGTGCTGAGATTGCGA 41467 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || || || ||||| || || || |||||||| |||| Sbjct 41489 AAGACACTCACCGGCAAGACAATTACCTTGGAGGTTGAGAGCTCTGACACTATCGACAAT 41548 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || || || ||| |||||| ||| |||| ||||| Sbjct 41549 GTAAAGTCCAAGATCCAGGACAAGGAGGGTATTCCGCCGGATCAGCAACGACTGATCTTT 41608 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||| ||||| || || | ||| | | ||||||||| | ||||| ||| | Sbjct 41609 GCCGGAAAGCAATTGGAGGACGGTCGTACTCTTTCTGATTACAACATTCAGAAGGAGAGT 41668 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||| | ||| | ||||||| Sbjct 41669 ACACTGCACTTGGTTCTCCGACTTCG 41694 >seq123 Length=109856 Score = 87.8 bits (96), Expect = 4e-12 Identities = 171/250 (68%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 173106 GGCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTG 173165 |||||||||||||| ||||| || | ||| ||| | || ||| |||| ||| | Sbjct 48180 GGCGTCCTTGTAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTCCAAGATGGCATA 48121 Query 173166 CCA-AAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCAT 173224 ||| || ||| || || || | || || ||| ||||| || || || |||| Sbjct 48120 CCACAACTTC-TGTGCCTTGATTGTCTGTCGGCCTCGGCCTTCCTTCTCATACTTCTCGA 48062 Query 173225 AGAGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAA 173284 | || | ||||| |||| ||||| || | ||| |||||||| || || || | Sbjct 48061 ACAGAGCCTCGAACTCCTCACCGTAGCAGTCAGATAAACCTGGAGCTTCGTTGGGGCAGA 48002 Query 173285 AGAGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCG 173344 ||||| |||| | ||| | |||| |||| ||||||||| || || | |||||| | | Sbjct 48001 AGAGAGTCCAGTCTCCGTTTTTCTCAACCCGCTTCATGAACAGATCTGGAGTCCAGAGAG 47942 Query 173345 CGTAGAACAA 173354 |||| ||||| Sbjct 47941 CGTAAAACAA 47932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181817514168857