Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq154 122 2e-22
seq123 87.8 4e-12
>seq154
Length=71981
Score = 122 bits (134), Expect = 2e-22
Identities = 156/214 (73%), Gaps = 1/214 (0%)
Strand=Plus/Plus
Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237
||||| |||||| |||||||| ||||| || || | ||||||||| ||||| || |
Sbjct 41254 TTTTGTCAAAACTCTCACAGGCAAAACCATAACACTCGAAGTGGAATCATCTGATACCAT 41313
Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297
||| || ||| || || ||||| || ||||| ||| || ||| || | |
Sbjct 41314 CGATAACGTTAAGTCGAAAATCCAAGACAAGGAAGGTATTCCACCAGACCAGCAGCGGTT 41373
Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357
|||||||| || || ||| |||| ||||| | || ||| | ||||||||| | |||||
Sbjct 41374 GATCTTCGCAGGCAAACAGCTGGAGGATGGTCGAACCTTGTCAGATTACAACATTCAGAA 41433
Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391
||||||||| || |||||||| ||||| | |||
Sbjct 41434 AGAGTCTACACTGCACCTTGTGCTGAGATTGCGA 41467
Score = 111 bits (122), Expect = 4e-19
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || ||||| || || || || || ||||| || || || |||||||| ||||
Sbjct 41489 AAGACACTCACCGGCAAGACAATTACCTTGGAGGTTGAGAGCTCTGACACTATCGACAAT 41548
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|||||| ||||| || || || || || ||| |||||| ||| |||| |||||
Sbjct 41549 GTAAAGTCCAAGATCCAGGACAAGGAGGGTATTCCGCCGGATCAGCAACGACTGATCTTT 41608
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||||||||| ||||| || || | ||| | | ||||||||| | ||||| ||| |
Sbjct 41609 GCCGGAAAGCAATTGGAGGACGGTCGTACTCTTTCTGATTACAACATTCAGAAGGAGAGT 41668
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390
|| || ||| | ||| | |||||||
Sbjct 41669 ACACTGCACTTGGTTCTCCGACTTCG 41694
>seq123
Length=109856
Score = 87.8 bits (96), Expect = 4e-12
Identities = 171/250 (68%), Gaps = 2/250 (1%)
Strand=Plus/Minus
Query 173106 GGCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTG 173165
|||||||||||||| ||||| || | ||| ||| | || ||| |||| ||| |
Sbjct 48180 GGCGTCCTTGTAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTCCAAGATGGCATA 48121
Query 173166 CCA-AAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCAT 173224
||| || ||| || || || | || || ||| ||||| || || || ||||
Sbjct 48120 CCACAACTTC-TGTGCCTTGATTGTCTGTCGGCCTCGGCCTTCCTTCTCATACTTCTCGA 48062
Query 173225 AGAGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAA 173284
| || | ||||| |||| ||||| || | ||| |||||||| || || || |
Sbjct 48061 ACAGAGCCTCGAACTCCTCACCGTAGCAGTCAGATAAACCTGGAGCTTCGTTGGGGCAGA 48002
Query 173285 AGAGACTCCAATTTCCATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATCG 173344
||||| |||| | ||| | |||| |||| ||||||||| || || | |||||| | |
Sbjct 48001 AGAGAGTCCAGTCTCCGTTTTTCTCAACCCGCTTCATGAACAGATCTGGAGTCCAGAGAG 47942
Query 173345 CGTAGAACAA 173354
|||| |||||
Sbjct 47941 CGTAAAACAA 47932
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181817514168857
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |