Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq123 178 1e-39 seq85 98.7 9e-16 seq154 89.7 5e-13 >seq123 Length=109856 Score = 178 bits (196), Expect = 1e-39 Identities = 626/961 (65%), Gaps = 35/961 (4%) Strand=Plus/Minus Query 147465 AGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCA 147524 ||| |||| |||||||||||| ||| || | | || |||||| | |||||| | ||| Sbjct 48294 AGAAGCCAAATTGCAGACGGCGACCTCGTCAGGGGCGGTGTACTCAATGATTTCTGTGCA 48235 Query 147525 CAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTC 147584 || |||| | | || ||| ||||| || | |||||| ||||| | ||||| ||||| Sbjct 48234 CAAGTTGGAGGACTTGATGGTGCCCAAGTTCTTCTGATTACTTTTTCTGTTGCAGGCGTC 48175 Query 147585 TTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATG 147641 ||| |||||||| | || || ||||| || | || | ||| | ||| Sbjct 48174 CTTGTAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTCCAAGATGGCATACCA--- 48118 Query 147642 CAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAA 147701 || | ||| || | ||| || ||||| || || || ||| |||| ||| Sbjct 48117 CAACTTCTGTGCCTTGATTGTCTGTCGGCCTCGGCCTTCCTTCTCATACTTCTCGAACAG 48058 Query 147702 CCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAG 147761 ||| ||||| || |||||||| || | | || ||| | | || || | || Sbjct 48057 AGCCTCGAACTCCTCACCGTAGCAGTCAGATAAACCTGGAGCTTCGTTGGGGCAGAAGAG 47998 Query 147762 CGACCACATGTCGTCCGCGTT----AACGCGTCGCATAAACAGATCCGGCACCCACAGCG 147817 | ||| ||| |||| || ||| || ||| |||||||| || ||| || | Sbjct 47997 AGTCCA---GTC-TCCGTTTTTCTCAACCCGCTTCATGAACAGATCTGGAGTCCAGAGAG 47942 Query 147818 CGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAA--TTAAG 147875 |||| | | ||| || || | | | || || || | | || | | || || Sbjct 47941 CGTAAAACAAATCACGAGCAC-GAACTTCTTCCTTTCCGTGGTTC-TTCCGGAGGTTCAG 47884 Query 147876 CACGCT-ATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCT 147934 | | || | ||| |||||||||||||| |||| ||| ||||| | ||||| | || Sbjct 47883 C-CACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAACGGCAAAGGCACCAGGTCTCT 47825 Query 147935 TT---CCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCA 147991 | |||||||||||||| | || | | |||| ||| || || | ||| || | | Sbjct 47824 TGTTGCCGCCCTGGTCGACGTATCGAGCAGTATTGTCAAAGACTCGGAGCATAGGGACAA 47765 Query 147992 GGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCA 148051 ||||| | | |||||||| ||| ||| | | ||| ||||| | || ||| | Sbjct 47764 GGCCGTTTGATGTGCCGTTTGTGCCTGCGATATAGGAGCCAGTCGCTCGAATTTTGTGGA 47705 Query 148052 CGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGT-- 148109 |||| | ||||| |||||| | | |||||| || ||||| | | | ||| Sbjct 47704 CGTTCAATCCAATACCGCCGGCATTCTTTGAGATCATGGCGCA---GGTCTTTAGCGTAT 47648 Query 148110 -GTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCG 148168 |||||| || ||||| ||| | || | | | | ||| ||||| || ||||||| | Sbjct 47647 CGTAGATTCCCTCGATCGAGTCCTCCTTCATGTCGATCAAGAAACATGATGACATTTGAG 47588 Query 148169 GAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCA 148228 | | | || || || ||| |||||||| ||||| || |||| || || || Sbjct 47587 CATTTGGTGTGCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGTGAACATCTTCTGGGACA 47528 Query 148229 TCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGC 148288 | | || |||||||| | | ||||| || || || |||||||| | | |||| Sbjct 47527 TGAGATTGTATGTCTCAATGACCTTCTCGATATCTTCTCCATGAATGCCAACAGACACGC 47468 Query 148289 GCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTG--AT-CTTGAGAAGATATC 148345 |||| |||||||||||||||| ||| || | | || ||| || |||||||||||| Sbjct 47467 GCATCAGCATGTGCTGTGGTCTTTC-CCA--TGGCTTCTTGTCATATTTGAGAAGATATG 47411 Query 148346 CATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGG 148405 |||| || || ||| | ||||| || ||||| | ||||||| | ||||| | |||| Sbjct 47410 ATCTTTCCAGTGTCTTGAAGCCAAAATAGTTGTAGTTAAAATCTCGGTCGTATACAATGG 47351 Query 148406 C 148406 | Sbjct 47350 C 47350 >seq85 Length=245923 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 47058 ATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAG 47117 ||||| | || || | || | |||||| ||||| || | |||||||||||| | || Sbjct 84368 ATCGAGCAAGAATTCCTCACCGAGGCGCTCCCCGTTGCTCTACTGGGCATGAACTCGAAG 84309 Query 47118 TCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCG 47177 ||| | || |||||||| || || || || |||||||| | || | ||| Sbjct 84308 CTCATGAAGCAGTACATTGAGTTCGTTGCCGACCGGCTGTTGGTAAGTATGGGTAACCCG 84249 Query 47178 AAATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAA 47237 || || | || | ||||||||||| |||||| | ||||| || || | |||||| Sbjct 84248 AAGTACTACAAGGTCACCAATCCGTTTGACTTTATGGAGAACATCTCTCTAGCGGGCAAG 84189 Query 47238 ACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 |||||||| |||||||| ||||| || || || Sbjct 84188 ACCAATTTCTTCGAGAAGCGAGTGGGTGACTA 84157 >seq154 Length=71981 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | |||| ||||| ||||||||||||||||||| ||| || ||||| Sbjct 40998 ACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCA 40939 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| ||||| | | || ||||| || || || ||||| ||||| || || || | Sbjct 40938 AGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGA 40879 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || | | || | || || | | || || || | || | || || Sbjct 40878 ATCTTGCTCTTGACATTGTCGATCGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTTG 40819 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||| || | ||| |||||||| Sbjct 40818 CCAGTCAGAGTCTTGACGAAGATCTGCAT 40790 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| ||||||||||| || || ||| || ||| || |||||||| || | Sbjct 41439 GACTCTTTCTGAATGTTGTAATCTGACAAGGTTCGACCATCCTCCAGCTGTTTGCCTGCG 41380 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | ||||| || ||||| || || ||||| || || ||||| || | Sbjct 41379 AAGATCAACCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGGATTTTCGACTTAACG 41320 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | | |||||||||| || | ||||| || || |||||||| Sbjct 41319 TTATCGATGGTATCAGATGATTCCACTTCGAGTGTTATGGTTTTGCCTGTGAGAGTTTTG 41260 Query 132110 ATGAAAATCTGCATG 132124 | ||||| |||||| Sbjct 41259 ACAAAAATTTGCATG 41245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476609907192120