Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq154 95.1 1e-14 seq123 86.0 6e-12 >seq154 Length=71981 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| || ||||| || || || | ||||| |||| || || | Sbjct 41017 CATGCAGATTTTTGTGAAGACATTGACTGGTAAGACAATCACTCTCGAGGTTGAGTCTTC 41076 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||| ||||| | || || ||||| ||||| |||||||| || ||||| || Sbjct 41077 CGATACCATCGACAATGTCAAGAGCAAAATCCAGGATAAGGAGGGTATTCCTCCCGACCA 41136 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| ||||||| | | || || ||||| ||||| | ||| | | || |||||||| Sbjct 41137 GCAGCGACTCATCTTTGCTGGTAAGCAACTGGAAGACGGCCGAACTTTGAGTGATTACAA 41196 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||| || || ||||| || |||| |||| Sbjct 41197 TATCCAGAAGGAATCGACTCTTCACCTAGT 41226 >seq123 Length=109856 Score = 86.0 bits (94), Expect = 6e-12 Identities = 179/264 (68%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 138142 ACGTTGAGGCCGATGCCGCCTCCGTGTTTAGATATCATGGCACAATCGTTGAGAGTTCTA 138201 ||||| | || || ||||| | | || || |||||||| || || || || Sbjct 47705 ACGTTCAATCCAATACCGCCGGCATTCTTTGAGATCATGGCGCAGGTCTTTAGCGTATCG 47646 Query 138202 TAGATGCCGTTTATGCTGTCTTCCTGGATGTTGAGTAGATAACACGACGACATTTGAGGC 138261 ||||| || | || ||| |||| |||| || | |||| || |||||||||| | Sbjct 47645 TAGATTCCCTCGATCGAGTCCTCCTTCATGTCGATCAAGAAACATGATGACATTTGAG-C 47587 Query 138262 ATTTTCA-TGCCAGCCGAGAATAGAGTGGGACTAGCGTGGGTAAACATTTTCGAGCGCAT 138320 |||| |||| || ||| || ||||| |||||| || ||||| ||| | ||| Sbjct 47586 ATTTGGTGTGCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGTGAACATCTTCTGGGACAT 47527 Query 138321 CAATCTATATGACTCGATCGCACTCTCGATATCATCACCATGAATCTGAAGAGCGACACG 138380 | | |||| ||| || | |||||||||| || |||||||| || || || || Sbjct 47526 GAGATTGTATGTCTCAATGACCTTCTCGATATCTTCTCCATGAATGCCAACAGACACGCG 47467 Query 138381 CATCAGCATGTGTTGAGGTCTCTC 138404 |||||||||||| || ||||| || Sbjct 47466 CATCAGCATGTGCTGTGGTCTTTC 47443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445093192681440