Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq85 190 3e-42 seq123 152 7e-31 >seq85 Length=245923 Score = 190 bits (210), Expect = 3e-42 Identities = 369/532 (69%), Gaps = 26/532 (5%) Strand=Plus/Minus Query 1455791 CAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGG- 1455849 ||| || ||||| |||||||| ||||||||||| || |||||||| | ||| | Sbjct 84984 CAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAAGAAGTCGACCT----GTCGAAAGATC 84929 Query 1455850 TCCACTGGGTGTC-------GCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTC 1455902 ||||| | || | ||| | ||| ||||| || | ||| | ||||||||| Sbjct 84928 TCCAC-GACTGGCACCACAAGCTCAACGATGACGAACGTTACTTCGTTTCCCACGTCCTC 84870 Query 1455903 GCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAA 1455962 || ||| ||||||||| || |||||||| ||||||||| | || ||||| Sbjct 84869 GC-TTTCTTCGCCGCCTCGGACGGCATCGTCAACGAGAACCTTGTCGAGCGCTTCTCCGG 84811 Query 1455963 AGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACAT 1456022 || |||||| | || || || || | ||||| || ||||||||| || |||||||| Sbjct 84810 CGAAGTCCAAGTCCCCGAAGCCCGCTGCTTTTATGGCTTCCAGATCATGATGGAAAACAT 84751 Query 1456023 CCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAG-AAGG 1456081 |||| |||| ||||| || || || ||||| ||| | || || || || || | Sbjct 84750 CCACAGCGAAATGTACTCACTTCTCATTGACACATACATTAAAGAGCC---AAAGCAAAG 84694 Query 1456082 AC--CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGC 1456139 || ||||||| ||||||||| || | || | | || || || || || ||||| Sbjct 84693 ACAATACCTCTTCGACGCCATCGATACAATTCCTTGCATTAGAAAGAAAGCTGAATGGGC 84634 Query 1456140 GATGAAGTGGA-TCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGC 1456198 | |||| | | | ||| | || || ||||||| |||| || |||| |||||| Sbjct 84633 TCTCCGCTGGATTTCAGATCGAGAG--TCCAC-CTTTGCCCAGCGTCTGGTCGCCTTTGC 84577 Query 1456199 CGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCG 1456257 ||| || || || ||||| ||||| ||| ||| | ||||||| |||||||||||||| Sbjct 84576 CGCTGTGGAAGGTATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGGCTCAAGAAGCG 84517 Query 1456258 CGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 || ||||||||||| ||| ||| ||||||| ||||| || ||||| Sbjct 84516 AGGTCTCATGCCCGGCCTT-ACCTTCTCCAACGAACTTATCTCCCGGGACGA 84466 Score = 104 bits (114), Expect = 3e-16 Identities = 178/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||||||||||||||| |||||||| |||| || ||| |||| |||| || || || Sbjct 84389 ATCATCGTCGAGGCCGTCCAGATCGAGCAAGAATTCCTCACCGAGGCGCTCCCCGTTGCT 84330 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || | ||||||||| | | ||||||| |||||||||| | || || |||||||| | Sbjct 84329 CTACTGGGCATGAACTCGA-AGCTCATGAAGCAGTACATTG-AGTTCGTTGCCGACCGGC 84272 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 || | | | || | |||| ||||| | |||| ||||| | ||| Sbjct 84271 TG-TTGGTAAGTATGGGTAACCCGAAGTACTACAAGGTCACCAATCCGTTTGACTTTATG 84213 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761 ||| ||||| || | |||||||||||| || |||||| || || || || ||| Sbjct 84212 GAGAACATCTCTCTAGCGGGCAAGACCAATTTCTTCGAGAAGCGAGTGGGTGACTACCAA 84153 Query 1456762 AAGGCCGGCGTCA 1456774 ||||| || |||| Sbjct 84152 AAGGCTGGTGTCA 84140 >seq123 Length=109856 Score = 152 bits (168), Expect = 7e-31 Identities = 209/292 (72%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 259894 CATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 |||||| ||| || ||||||| || ||||||| ||||| ||||| ||||| || Sbjct 47526 CATGTCCCAGAAGATGTTCACACACGCTTCGCCCACCCTCTTCAATGCAGGCACACCAAA 47585 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 | || | || || || || || | |||||||||| || ||||||||||| ||||| Sbjct 47586 TGCTCAAATGTCATCATGTTTCTTGATCGACATGAAGGAGGACTCGATCGAGGGAATCTA 47645 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073 || ||||| ||| ||||| | ||||| ||| |||||||| || || || || Sbjct 47646 CGATACGCTAAAGACCTGCGCCATGATCTCAAAGAATGCCGGCGGTATTGGATTGAACGT 47705 Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133 ||||| | || || | ||| |||| | || ||||| |||||| || |||||||| Sbjct 47706 CCACAAAATTCGAGCGACTGGCTCCTATATCGCAGGCACAAACGGCACATCAAACGGCCT 47765 Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 ||| || ||||| || || ||| || | || || || |||||||||||| || Sbjct 47766 TGTCCCTATGCTCCGAGTCTTTGACAATACTGCTCGATACGTCGACCAGGGC 47817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177790269951154