Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq154 138 1e-27 seq43 100 3e-16 seq123 86.0 6e-12 >seq154 Length=71981 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || |||| | || || ||| ||||| || || || || || ||||||||||| || | | Sbjct 41472 CCACCTCGCAATCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGAC 41413 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || ||| || || || |||||||||||||| || ||||| |||||||| || || || Sbjct 41412 AA-GGTTCGACCATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGG 41354 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || ||||| ||||| || || || | || || || |||||||| Sbjct 41353 AATACCTTCCTTGTCTTGGATTTTCGACTTAACGTTATCGATGGTATCAGATGATTCCAC 41294 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || |||||||| || || | |||||| || ||||||||||| Sbjct 41293 TTCGAGTGTTATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCAT 41246 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| | ||| || || ||||| || |||||||||||||||| Sbjct 41016 CCGCCACGGAGACGGAGCACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCTC 40957 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || ||| || ||||| || || || ||||||| ||| ||||| || || || Sbjct 40956 AAGGTGCGACCGTCTTCAAGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGGA 40897 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || |||||||| || ||||| ||| | ||||| ||||| || Sbjct 40896 ATGCCCTCCTTGTCTTGAATCTTGCTCTTGACATTGTCGATCGTGTCACTGGATTCGACC 40837 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| || || || | ||| || ||||| || ||||||||| Sbjct 40836 TCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCATTTTG 40786 >seq43 Length=153456 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| ||||| | || |||||||| || || ||||| || ||||||||||||| | Sbjct 109527 CCGCCTCGAAGTCGTAGTACCAGGTGTAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTA 109468 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || || ||||| || ||||| || || ||||| ||||||||||| || || Sbjct 109467 AGGGTGCGACCATCCTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGCTGATCAGGTGGA 109408 Query 134607 ATGCCTTCTTTTTCTTGA 134624 || || || || ||| || Sbjct 109407 ATACCCTCCTTGTCTGGA 109390 >seq123 Length=109856 Score = 86.0 bits (94), Expect = 6e-12 Identities = 174/257 (68%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || ||||||||| |||||||| | || |||||||| || ||||| || || | | | Sbjct 47452 CAGCACATGCTGATGCGCGTGTCTGTTGGCATTCATGGAGAAGATATCGAGAAGGTCATT 47511 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || || ||| | | ||||| ||| ||| || ||||||||||||||| | || Sbjct 47512 GAGACATACAATCTCATGTCCCAGAAGATGTTCACACACGCTTCGCCCACCCTCTTCAAT 47571 Query 7684 GCGGGCA---CAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGAC 7740 || |||| |||| | ||||| |||| || ||||| ||| | |||| || ||| Sbjct 47572 GCAGGCACACCAAATG---CTCAAATGTCATCATGTTTCTTGATCGACATGAAGGAGGAC 47628 Query 7741 AGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGC 7800 ||||| || || ||| | ||||| ||||||| || || || | | |||| Sbjct 47629 TCGATCGAGGGAATCTACGATACGCTAAAGACCTGCGCCATGATCTCAAAGAATGCCGGC 47688 Query 7801 GGAATAGGTCTGAACGT 7817 || || || ||||||| Sbjct 47689 GGTATTGGATTGAACGT 47705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397029106840