Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq154 138 1e-27
seq43 100 3e-16
seq123 86.0 6e-12
>seq154
Length=71981
Score = 138 bits (152), Expect = 1e-27
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545
|| |||| | || || ||| ||||| || || || || || ||||||||||| || | |
Sbjct 41472 CCACCTCGCAATCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGAC 41413
Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605
|| ||| || || || |||||||||||||| || ||||| |||||||| || || ||
Sbjct 41412 AA-GGTTCGACCATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGG 41354
Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665
|| ||||| || ||||| ||||| || || || | || || || ||||||||
Sbjct 41353 AATACCTTCCTTGTCTTGGATTTTCGACTTAACGTTATCGATGGTATCAGATGATTCCAC 41294
Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| || |||||||| || || | |||||| || |||||||||||
Sbjct 41293 TTCGAGTGTTATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCAT 41246
Score = 132 bits (146), Expect = 5e-26
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | ||| | ||| || || ||||| || ||||||||||||||||
Sbjct 41016 CCGCCACGGAGACGGAGCACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCTC 40957
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| |||| || ||| || ||||| || || || ||||||| ||| ||||| || || ||
Sbjct 40956 AAGGTGCGACCGTCTTCAAGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGGA 40897
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||||| || || |||||||| || ||||| ||| | ||||| ||||| ||
Sbjct 40896 ATGCCCTCCTTGTCTTGAATCTTGCTCTTGACATTGTCGATCGTGTCACTGGATTCGACC 40837
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717
|| || || ||||| || || || | ||| || ||||| || |||||||||
Sbjct 40836 TCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCATTTTG 40786
>seq43
Length=153456
Score = 100 bits (110), Expect = 3e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| |||| ||||| | || |||||||| || || ||||| || ||||||||||||| |
Sbjct 109527 CCGCCTCGAAGTCGTAGTACCAGGTGTAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTA 109468
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| |||| || || ||||| || ||||| || || ||||| ||||||||||| || ||
Sbjct 109467 AGGGTGCGACCATCCTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGCTGATCAGGTGGA 109408
Query 134607 ATGCCTTCTTTTTCTTGA 134624
|| || || || ||| ||
Sbjct 109407 ATACCCTCCTTGTCTGGA 109390
>seq123
Length=109856
Score = 86.0 bits (94), Expect = 6e-12
Identities = 174/257 (68%), Gaps = 6/257 (2%)
Strand=Plus/Plus
Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623
|| ||||||||| |||||||| | || |||||||| || ||||| || || | | |
Sbjct 47452 CAGCACATGCTGATGCGCGTGTCTGTTGGCATTCATGGAGAAGATATCGAGAAGGTCATT 47511
Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683
|| || ||| | | ||||| ||| ||| || ||||||||||||||| | ||
Sbjct 47512 GAGACATACAATCTCATGTCCCAGAAGATGTTCACACACGCTTCGCCCACCCTCTTCAAT 47571
Query 7684 GCGGGCA---CAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGAC 7740
|| |||| |||| | ||||| |||| || ||||| ||| | |||| || |||
Sbjct 47572 GCAGGCACACCAAATG---CTCAAATGTCATCATGTTTCTTGATCGACATGAAGGAGGAC 47628
Query 7741 AGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGC 7800
||||| || || ||| | ||||| ||||||| || || || | | ||||
Sbjct 47629 TCGATCGAGGGAATCTACGATACGCTAAAGACCTGCGCCATGATCTCAAAGAATGCCGGC 47688
Query 7801 GGAATAGGTCTGAACGT 7817
|| || || |||||||
Sbjct 47689 GGTATTGGATTGAACGT 47705
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505397029106840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |