Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq123 168 9e-37 >seq123 Length=109856 Score = 168 bits (186), Expect = 9e-37 Identities = 1163/1853 (63%), Gaps = 45/1853 (2%) Strand=Plus/Minus Query 68404 GTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTT 68463 || || ||||||||||| || || || ||||| | |||| || ||| |||||| Sbjct 49175 GTTCGAAGATAGTACATGCCAGTCTTGAGACCCATTTTCCAGCCAGCGAAGTGCATAGAA 49116 Query 68464 GTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATG 68523 || | ||| |||| || | |||||| |||| ||| || ||||| ||| Sbjct 49115 GTGATCTTGCCCATGGTTGGTTCCTTCAGATGAATGTTCAACGACTGTGACTGATCAATG 49056 Query 68524 AAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTC 68583 || || |||| ||| || ||||| | || ||| | | |||| || ||||| | |||| Sbjct 49055 AAGGCACCTCGATCAGCGGCCATCTGGATGATAGTTCTCTGAGAGATCTCCCAGACAGTC 48996 Query 68584 TTAAAAATCTGTTTGATATCATCTGGAAGGCTCG-TA--TTTTGAATGGATCCACCATCG 68640 || | | |||||| || ||||| | | | || || ||||| || || || ||| Sbjct 48995 TTGTAGAGTGCTTTGATGTCGGTTGGAATGTTTGGTACGTTCTGAATTGAACCGCCCTCG 48936 Query 68641 GATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGG 68700 | || ||| | ||||| || | || ||||| || | | || | || Sbjct 48935 GCAATGATTCTGTTCTTCATGTTGTCCGACCACAGGCCAAGATCAACGAGATCTTTGAGC 48876 Query 68701 AGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTG 68760 || ||||| || | |||||||| || | |||||| | ||| | ||| || || Sbjct 48875 AGCCATGGATTGACGACCTGAAATTCGCCTGCTAACACACGACGGGAGTAGATGTTGGAT 48816 Query 68761 GTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATA 68820 |||||||| || | |||||||||| |||| || || | || || || || ||||| Sbjct 48815 GTATATGGCTCGAAGCATTCATTATTGCCCAATATCTGCGACGTAGAGGCGGTCGGCATG 48756 Query 68821 GGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTC 68880 ||||| || | | | ||||| || ||||| || || |||| | | | Sbjct 48755 GGTGCGACAAGAAGAGAATTTCGAACACCATACTGAGCAATCTTGGCTTTCAAGGCCTCC 48696 Query 68881 CAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTT 68940 || |||||||| || | |||| | | ||| || ||||| ||||| || | | Sbjct 48695 CAGTCCCAAAGGTCTGTTGGTGTCAGACCCCAGAGGTCGTACTGTAGCTGACCTTGAG-- 48638 Query 68941 GCATATG----ATCCATTATATGTTTCATAAGGTCC---TTCCTGTTCAGCTAGTTCACA 68993 | ||| | || | ||| ||||| || || || ||||| || || || ||||| Sbjct 48637 --AAATGGGCGAGCCCTCATAGGTTTCGTATGGACCAAGTTCCT--TC-GCAAGGTCACA 48583 Query 68994 ACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGC 69053 || | || ||| || || || ||||| || | | ||||| | | ||| Sbjct 48582 TGAAGCTGTCAGAGCTGCGTGGTAGATAGTCTCGAATATTTGAATGTTGAGCTGTCTTGC 48523 Query 69054 TTCTAGACTATCGAATGGATAATGTAAAAG-AATAAATGCATCTGCCAATCCCTGAACCC 69112 ||| || |||||| || | | ||| | || || ||||| || | || ||||| | Sbjct 48522 TTCGGGAGAATCGAACGGC-AGTCTAAGGGCAAGGAAAGCATCAGCAAGGCCTTGAACAC 48464 Query 69113 CAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCA-GCTTCTGGAATAGGATAATAA 69171 ||| ||| || |||| ||||| | ||| ||||| ||||| || | || || || Sbjct 48463 CAAGACCAATGGGTCGGTGTCTGA-AGTTGCTCTTTCTCGCTTCCGGGACGGGGTAGTAG 48405 Query 69172 TTAATATCTATAATTTTATTAAGATTTCGGACTACT-ACTTTAACCACGTCCTTTAGTTT 69230 || || || || || || || || || | | | | || | | || || | ||| Sbjct 48404 TTGATCTCGATGATCTTGTTCAGGTT-CTTAGTCATGACCTGGATGACCTCGTGCAGTCG 48346 Query 69231 GAGAAAATCAAATCGTCCATCTAT------AACAAACATATT-CAGTGCTACAGATGCTA 69283 | ||| ||| || | || || | ||| || | || || || ||||| || | Sbjct 48345 GCCAAAGTCATATTGACCTTCGACTTGGTCAACGAA-AGATGGCAAAGCAACAGAAGCCA 48287 Query 69284 GATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTAC 69343 ||| || || || ||||| | || | || | || || ||||| || | || Sbjct 48286 AATTGCAGACGGCGACCTCGTCAGGGGCGGTGTACTCAATGATTTCTGTGCACAAGTTGG 48227 Query 69344 TACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAA 69403 | ||||| || |||| || | ||||||||| ||| |||| |||||||||||||| | Sbjct 48226 AGGACTTGATGGTGCCCAAGTTCTTCTGATTACTTTTTCTGTTGCAGGCGTCCTTGTAGA 48167 Query 69404 GAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCA-AACGAC---- 69458 | || || || | ||||| ||| |||| | || | || | | ||| ||| | Sbjct 48166 GCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTCCAAGATGGCATACCACAACTTCTGTG 48107 Query 69459 CCTAGCATTTATTACGGTCTTGTAACGCTTCTCTTTTTCATA-TTGT-GTATATAGCCGT 69516 ||| | | | | ||| || | || | || || ||||| || | | | | |||| Sbjct 48106 CCTTGATTGTCTGTCGGCCTCG----GCCT-TCCTTCTCATACTTCTCGAACAGAGCC-- 48054 Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 ||||| || || || | ||| || || ||| ||| || || || | | | | Sbjct 48053 TCGAACTCCTCACCGTAGCAGTCAGATAAACCTGGAGCTTCGTTGGGGCAGAAGAGAGTC 47994 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAG 69636 || | | | | || ||| || ||||| || ||||| ||| |||| ||||| ||| Sbjct 47993 CAGTCTCCGTTTTTCTCAACCCGCTTCATGAACAGATCTGGAGTCCAGAGAGCGTAAAAC 47934 Query 69637 AGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATA 69696 | ||| | | | | |||||| ||||| || || || | || |||| | Sbjct 47933 AAATCACGAGCACGAACTTCTTCCTTTCCGTGGTTCTTCCGGAGGTTCAGCCACTCAAAG 47874 Query 69697 ATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCC 69756 | ||| | ||||| || || || || | || | | | || |||| || || || ||| Sbjct 47873 ACATCGGCGTGCCAGGGCTCAAGGTAAACGGCAAAGGCACCAGGTCTCTTGTTGCCGCCC 47814 Query 69757 TGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGAT 69816 || || | ||||| ||||| || | | |||||| ||||| || | || || || ||| Sbjct 47813 TGGTCGACGTATCGAGCAGTATTGTCAAAGACTCGGAGCATAGGGACAAGGCCGTTTGAT 47754 Query 69817 TTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCT 69876 | || ||||| || | ||||| || | || ||||| || | | || Sbjct 47753 GTGCCGTTTGTGCCTGCGATATAGGAGCCAGTCGCTCGAATTTTGTGGACGTTCAATCCA 47694 Query 69877 ATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCT 69936 || || || || | || ||||| | || || || | || || || || ||||| Sbjct 47693 ATACCGCCGGCATTCTTTGAGATCATGGCGCAGGTCTTTAGCGTATCGTAGATTCCCTCG 47634 Query 69937 ATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCC 69996 || || || |||||| | | ||||| ||||||||| || | || || Sbjct 47633 ATCGAGTCCTCCTTCATGTCGATCAAGAAACATGATGACATTTGAGCATTTGGTGTGCCT 47574 Query 69997 GCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTT 70056 ||||| || | || || || ||||| |||||| || | || | ||||||||||| Sbjct 47573 GCATTGAAGAGGGTGGGCGAAGCGTGTGTGAACATCTTCTGGGACATGAGATTGTATGTC 47514 Query 70057 TCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGC 70116 ||||| | || ||||| |||||| || | | || ||||||| ||| ||| Sbjct 47513 TCAATGACCTTCTCGATATCTTCTCCATGAATGCCAACAGACACGCGCATCAGCATGTGC 47454 Query 70117 TGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTA 70176 || |||| ||| | || || | ||| | || |||||| ||||||| || || Sbjct 47453 TGTGGTCTTTCCCATGGCTTCTTGTCATATTTGAGAAGATATGATCTTTCCAGTGTCTTG 47394 Query 70177 AACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAG 70229 || |||||||||||||| ||| |||| ||||| | ||| |||| || || Sbjct 47393 AAGCCAAAATAGTTGTAGTTAAAATCTCGGTCGTATACAATGGCAGAGTTGAG 47341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686906936759880