Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq154 120 3e-22 >seq154 Length=71981 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || ||||| ||||| ||||||||||||| | |||| ||||||| Sbjct 40998 ACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCA 40939 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| ||||| ||| |||| ||||| || || || || || | ||||| || || Sbjct 40938 AGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGA 40879 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| | || | | || | ||||| ||| ||| || || || || || | ||| Sbjct 40878 ATCTTGCTCTTGACATTGTCGATCGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTTG 40819 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||||||| || || ||||| ||||| Sbjct 40818 CCAGTCAGAGTCTTGACGAAGATCTGCAT 40790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424933276181304