Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq123 289 4e-73 seq85 131 2e-25 seq69 95.1 2e-14 >seq123 Length=109856 Score = 289 bits (320), Expect = 4e-73 Identities = 1140/1768 (64%), Gaps = 59/1768 (3%) Strand=Plus/Minus Query 110354 GCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGC 110413 ||| | | ||| ||||||||||| || |||||||| || |||||| | | ||| Sbjct 49181 GCCATGGTTCGAAGATAGTACATGCCAGTCTTGAGACCCATTTTCCAGCCAGCGAAGTGC 49122 Query 110414 ATAGAAGAGAGCTTGGACATCGTTGGA--CTTTCCATGAAGAGGTTCAT--ACTTTGACT 110469 ||||||| || |||| ||| ||||| ||| ||||| ||||| ||| ||||| Sbjct 49121 ATAGAAGTGATCTTGCCCATGGTTGGTTCCTTCAGATGAAT--GTTCAACGACTGTGACT 49064 Query 110470 TTGGTCAATGAAGCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTA---AT 110526 | ||||||||| || || | || ||||| | |||| | ||| ||| | || Sbjct 49063 --GATCAATGAAGGCACCTCGATCAGCGGCCATCTGGATGATAG--TTC-TCTGAGAGAT 49009 Query 110527 TTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGAT 110586 ||||| || || ||||| ||||| || ||| || | || | ||||| || Sbjct 49008 CTCCCAGACAGTCTTGTAGAGTGCTTTGATGTCGGTTGGAATGTTTGGTACGTTCTGAAT 48949 Query 110587 GGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTT 110646 ||||| ||| | | || | |||||| | | ||||| || |||| | Sbjct 48948 TGAACCGCCCTCGGCAATGATTCTGTTCTTCATGTTGTCCGACCACAGGCCAAGATCAAC 48889 Query 110647 GAGGTCATTGACGAGGTGCTTG--TTGACAATGACAAACTCACCTGCGAGGGTTCTTCTC 110704 ||| || |||| || | || ||||| | ||| || ||||| | | | Sbjct 48888 GAGATCTTTGAGCAGC--CATGGATTGACGACCTGAAATTCGCCTGCTAACACACGACGG 48831 Query 110705 AGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTG 110764 ||||||||| | ||| ||||| || |||||||||||||| ||||| || || | || Sbjct 48830 GAGTAGATGTTGGATGTATATGGCTCGAAGCATTCATTATTGCCCAATATCTGCGACGTA 48771 Query 110765 GAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGT 110824 ||||| || ||||| ||||| | | |||| || |||| ||| | || || Sbjct 48770 GAGGCGGTCGGCATGGGTGCGACAAGAAGAGAATTTCGAACACCATACTGAGCAATCTTG 48711 Query 110825 TCCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACT 110882 | || | | |||||||| | | | | ||||| ||| |||| | ||| ||| Sbjct 48710 GCTTTCAAGGCCTCCCAGTCCCAAAGGTCTG-TTGGTGTCAGAC-CCCAGAGGTCGTACT 48653 Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942 | ||| ||||| || ||| || |||||| ||||||| || | ||| | | | | Sbjct 48652 GTAGCTGACCTTGAGAAATGGGCGAGCCCTCATAGGTTTCGTATGGACCAAGTTCCTTCG 48593 Query 110943 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002 | | ||||| || ||| | |||||| || || || || || || || || | Sbjct 48592 CAAGGTCACATGAAGCTGTCAGAGCTGCGTGGTAGATAGTCTCGAATATTTGAATGTTGA 48533 Query 111003 TCTCCTTGGCTTCATCTGAATCAAATGCG----TAGCGGCACAAAATAAATACATCCGCG 111058 || | ||||| ||||| || | || |||| | || |||| || Sbjct 48532 GCTGTCTTGCTTCGGGAGAATCGAACGGCAGTCTAAGGGCA----AGGAAAGCATCAGCA 48477 Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118 || ||||||||||| | |||||| |||| ||||| | || ||||| ||| | Sbjct 48476 AGGCCTTGAACACCAAGACCAATGGGTCGGTGTCTGAAGTTGCTCTTTCTCGCTTCCGGG 48417 Query 111119 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 111178 ||||| || | || | || |||| ||| || || || || | | || ||| Sbjct 48416 ACGGGGTAGTAGTTGATCTCGATGATCTTGTTCAGGTTCTTAGTCATGACCTGGATGACC 48357 Query 111179 TCATGAAGTTTTTCATAATCAAAAG----TGCGAGTCTCTTCATTGACATACTTTGGAAG 111234 || || ||| || | ||| | | ||| | | ||| || | | ||| | Sbjct 48356 TCGTGCAGTCGGCCAAAGTCATATTGACCTTCGACT-TGGTCAACGAAAGA---TGGCAA 48301 Query 111235 GGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTC 111294 || | || ||||||||||| || || ||| || | |||||||| | ||||| Sbjct 48300 AGCAACAGAAGCCAAATTGCAGACGGCGACCTCGTCAGGGGCGGTGTACTCAATGATTTC 48241 Query 111295 TGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCA 111354 ||| || |||||||| ||| || || ||||| ||||| || ||||| || ||||||| Sbjct 48240 TGTGCACAAGTTGGAGGACTTGATGGTGCCCAAGTTCTTCTGATTACTTTTTCTGTTGCA 48181 Query 111355 CGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTT 111414 || ||||||||||||||| | || | || ||||| ||||| | | | || || | Sbjct 48180 GGCGTCCTTGTAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTCCAAGATGGCATA 48121 Query 111415 CCA-AACATCGGCGGCTGGTACAATGGC-GTTGGCC-CGTCCCTCCGCCTCGTACTTTGT 111471 ||| ||| || | | || | | || | || |||| || || ||| ||| ||||| Sbjct 48120 CCACAACTTCTGTGCCTTG---ATTGTCTGTCGGCCTCGGCCTTCCTTCTCATACTTCTC 48064 Query 111472 GTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACA 111531 | | || || || ||||||||||| ||| || | |||||| || | || || || Sbjct 48063 GAACAGAGCCTCGAACTCCTCACCGTAGCAGTCAGATAAACCTGGAGCTTCGTTGGGGCA 48004 Query 111532 GAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG 111591 ||| |||| ||| | || || |||||||||||||||||| || |||||| |||| || Sbjct 48003 GAAGAGAGTCCAGTCTCCGTTTTTCTCAACCCGCTTCATGAACAGATCTGGAGTCCAGAG 47944 Query 111592 GGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAG 111651 | |||| | ||| | | ||| | ||||| | || ||||| || | | || Sbjct 47943 AGCGTAAAACAAATCACGAGCACGAACTTCTTCCTTTCCGTGGTTCTTCCGGAGGTTCAG 47884 Query 111652 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGAT------AGATCCCTT 111705 |||| | || ||| |||||||| |||||||| || || || | || || ||| Sbjct 47883 CCACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAACGGCAAAGGCACCAGGTCTCTT 47824 Query 111706 -TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAA 111764 | | ||||| | | || | || || || || || ||| || || ||||| || | Sbjct 47823 GTTGCCGCCCTGGTCGA----CGTATCGAGCAGTATTGTCAAAGACTCGGAGCATAGGGA 47768 Query 111765 TAATACCATCTGATTGACCATTTGTCCCC-CGA-ATACGAGATTTATTGGCTCTCACATC 111822 || || | |||| || ||||| || ||| ||| ||| | | |||| | | Sbjct 47767 CAAGGCCGTTTGATGTGCCGTTTGTGCCTGCGATATAGGAGCC--AGTCGCTCGAATTTT 47710 Query 111823 ATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 111882 |||| || || |||||||| || || ||||||||| || || | | || || Sbjct 47709 GTGGACGTTCAATCCAATACCGCCGGCATTCTTTGAGATCATGGCGCAGGTCTTTAGCGT 47650 Query 111883 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 111942 | ||||| || | ||| ||||||||||| || |||| | ||| || ||||| || Sbjct 47649 ATCGTAGATTCCCTCGATCGAGTCCTCCTTCATGTCGATCAAGAAACATGATGACATTTG 47590 Query 111943 CGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGA 112002 | ||||||| || |||||||||||||| || | ||||| ||||||| ||||| Sbjct 47589 AGCATTTGGTGTGCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGTGAACATCTTCTGGGA 47530 Query 112003 CATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGAC 112062 ||| | ||||||||| | ||| || || ||||| || || ||||| | | || Sbjct 47529 CATGAGATTGTATGTCTCAATGACCTTCTCGATATCTTCTCCATGAATGCCAACAGACAC 47470 Query 112063 CCGCATGAACATGTACTGTGGGGTTTCC 112090 ||||| | ||||| |||||| ||||| Sbjct 47469 GCGCATCAGCATGTGCTGTGGTCTTTCC 47442 >seq85 Length=245923 Score = 131 bits (144), Expect = 2e-25 Identities = 381/578 (66%), Gaps = 18/578 (3%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| || || |||||||| ||||| |||||||| || | || ||||| |||||| Sbjct 84157 TAGTCACCCACTCGCTTCTCGAAGAAATTGGTCTTGCCCGCTAGAGAGATGTTCTCCATA 84216 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCA--AATGGGTGGCACCCCAACTTGTTTGAGGAGAC 122488 |||||||| ||||| | | || | | | | | |||| |||| | || | Sbjct 84217 AAGTCAAACGGATTGGTGACCTTGTAGTACTTCGGGTTACCCATACTTACC--AACAGCC 84274 Query 122489 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 122548 | || | || |||||||||||| ||| || |||||||| || | || | Sbjct 84275 GGTCGGCAACGAACTCAATGTACTGCTTCATGAGCTTCGAGTTCATGCCCAGTAGAGCAA 84334 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 ||||| || || || ||| ||| ||| |||| || ||||| | |||||| | Sbjct 84335 CGGGGAGCGCCTCGGTGAGGAATTCTTGCTCGATCTGGACGGCCTCGACGATGATGGCCT 84394 Query 122609 GGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG---GCAAACT 122665 ||||| ||| | | ||| | | | ||| || |||| || | ||||| | Sbjct 84395 GGATAAGTTCCTTTGAGGGGCGGTG--GTTAAGGTGCGA-GAGCAGCAGGCACGCAAAGT 84451 Query 122666 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGA 122725 | ||| | ||||| || ||||| |||||||| || |||||| || || ||||||| Sbjct 84452 CGGTGTGCATGCCCTCGTCCCGGGAGATAAGTTCGTTGGAGAAGGTAAGGCCGGGCATGA 84511 Query 122726 GACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCA 122785 |||| |||||||| | ||| | || | | ||| || ||||||||||||||||| |||| Sbjct 84512 GACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATACCTTCCA 84571 Query 122786 CACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC---AAACCATT 122842 || ||||| || | || || | ||| |||| | |||| | ||| || ||| Sbjct 84572 CAGCGGCAAAGGCGACCAGACGCTGGGCAAAGGTG---GACTCTCGATCTGAAATCCAGC 84628 Query 122843 TCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACT 122902 | ||||||| || ||||| ||| || || | || | |||||| || || | | Sbjct 84629 GGAGAGCCCATTCAGCTTTCTTTCTAATGCAAGGAATTGTATCGATGGCGTCGAAGAGGT 84688 Query 122903 GCT-TCTTTTCAGATCCATCCTTAATGTATTTGTCAAT 122939 | ||||| | | || ||||||||| ||||||| Sbjct 84689 ATTGTCTTTGC-TTTGGCTCTTTAATGTATGTGTCAAT 84725 >seq69 Length=644404 Score = 95.1 bits (104), Expect = 2e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 164604 TATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCG 164663 ||||| ||||| || ||||| || || ||||| |||||| || | || || Sbjct 381192 TATGGGCGTGTAGCTCCACGCTCAGGACTCGCGTCAAAGCATTTCATCGACACAGGCGCA 381133 Query 164664 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 164723 ||||| |||||| ||||||| | ||| ||||||||||| | | ||||| | | ||| Sbjct 381132 GGTGTGATTGATGCCGACTACAGAGGAGAAGTCAAAGTATTGTTGTTCAACTTCAGTGAC 381073 Query 164724 AAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGA 164773 | |||| |||||| ||| | || || || ||||||||| | |||||||| Sbjct 381072 ACCGACTATGAGGTGAAGCAGGGAGAACGAATCGCACAATTAGTCCTTGA 381023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030296463200