Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq123 233 2e-56 seq85 116 5e-21 >seq123 Length=109856 Score = 233 bits (258), Expect = 2e-56 Identities = 552/822 (67%), Gaps = 15/822 (2%) Strand=Plus/Minus Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811 |||||||| || ||||| ||||||||||| || ||| ||||||||||||||||| ||| Sbjct 48257 GTGTACTCAATGATTTCTGTGCACAAGTTGGAGGACTTGATGGTGCCCAAGTTCTTCTGA 48198 Query 118812 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871 || ||| |||| || || |||||||| |||||| |||| | || ||||| || ||| Sbjct 48197 TTACTTTTTCTGTTGCAGGCGTCCTTGTAGAGCATGAATGGGTTTCCAGTCTCAGTCTGG 48138 Query 118872 GACTTGAGAATAGCCTTCCA-GACATCGGCAGCTGGCACAGTGGC-GTTGG-CTCGCCCC 118928 | || | || || | ||| || || | || | | || | || || |||| || Sbjct 48137 GCCTCCAAGATGGCATACCACAACTTCTGTGCCTTG---ATTGTCTGTCGGCCTCGGCCT 48081 Query 118929 TCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCT 118988 || | ||| ||||| | | || || || ||||| ||||| | || || | ||| Sbjct 48080 TCCTTCTCATACTTCTCGAACAGAGCCTCGAACTCCTCACCGTAGCAGTCAGATAAACCT 48021 Query 118989 GGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAG 119048 || || | | ||||||||||||| ||| | || | |||||||||||||||||| Sbjct 48020 GGAGCTTCGTTGGGGCAGAAGAGAGTCCAGTCTCCGTTTTTCTCAACCCGCTTCATGAAC 47961 Query 119049 AGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGA 119108 || ||||| ||||||| || | || | ||| ||| ||| ||||||| | || || Sbjct 47960 AGATCTGGAGTCCAGAGAGCGTAAAACAAATCACGAGCACGAACTTCTTCCTTTCCGTGG 47901 Query 119109 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCG 119168 || || | | || | || | || ||| |||||||| || || ||||| || || Sbjct 47900 TTCTTCCGGAGGTTCAGCCACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAACGGCA 47841 Query 119169 ATTG-ACC---CCTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATAC 119224 | | ||| || | | || |||||| || || | ||||| || ||| || Sbjct 47840 AAGGCACCAGGTCTCTTGTTG-CCGCCCTGGTCGACGTATCGAGCAGTATTGTCAAAGAC 47782 Query 119225 ACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTA 119282 || ||||| || | | || | ||| ||| ||||| || ||| ||| ||| | | Sbjct 47781 TCGGAGCATAGGGACAAGGCCGTTTGATGTGCCGTTTGTGCCTGCGATATAGGAGCC--A 47724 Query 119283 TTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCG 119342 | |||| | | ||||| || || |||||||| || || ||||||||| ||| Sbjct 47723 GTCGCTCGAATTTTGTGGACGTTCAATCCAATACCGCCGGCATTCTTTGAGATCATGGCG 47664 Query 119343 CACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAG 119402 || | | || | ||||||| || ||||||||||| |||| | |||| | ||| Sbjct 47663 CAGGTCTTTAGCGTATCGTAGATTCCCTCGATCGAGTCCTCCTTCATGTCGATCAAGAAA 47604 Query 119403 CAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATG 119462 || |||||||||| | ||||| || || |||||||| || || | ||||| || Sbjct 47603 CATGATGACATTTGAGCATTTGGTGTGCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGTG 47544 Query 119463 AACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGA 119522 ||||| |||||||| | ||| ||||| | ||| || ||||| || ||| Sbjct 47543 AACATCTTCTGGGACATGAGATTGTATGTCTCAATGACCTTCTCGATATCTTCTCCATGA 47484 Query 119523 ATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCC 119564 || || | || || ||||| | ||||| || ||| ||||| Sbjct 47483 ATGCCAACAGACACGCGCATCAGCATGTGCTGTGGTCTTTCC 47442 >seq85 Length=245923 Score = 116 bits (128), Expect = 5e-21 Identities = 217/312 (70%), Gaps = 10/312 (3%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| | |||||||| |||||||| ||||| || |||||| || || Sbjct 84445 GCAAAGTCGGTGTGCATGCCCTCGTCCCGGGAGATAAGTTCGTTGGAGAAGGTAAGGCCG 84504 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||||||||| |||||||| | |||||| || | || ||||| ||||||||||| Sbjct 84505 GGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATA 84564 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC---A 130192 || |||||| || || || | ||||||| ||||||| ||||| | ||| | Sbjct 84565 CCTTCCACAGCGGCAAAGGCGACCAGACGCTGGGCAAAGG---TGGACTCTCGATCTGAA 84621 Query 130193 AACCACTTCATCGCCCACTGCGCCTT-TTTCTCGATACACGGGACGGTCTGGATCGCTTC 130251 | ||| | ||||| | || || ||||| || || || | || | ||| || || Sbjct 84622 ATCCAGCGGAGAGCCCATTCAGCTTTCTTTCT-AATGCAAGGAATTGTATCGATGGCGTC 84680 Query 130252 AAAGAGTTCCT-TCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATG 130310 ||||| | | ||||| || ||| ||||| ||||| | || ||||| ||| || Sbjct 84681 GAAGAGGTATTGTCTTTGCT-TTGGCTCTTTAATGTATGTGTCAATGAGAAGTGAGTACA 84739 Query 130311 TTTCGCCATGGA 130322 |||||| |||| Sbjct 84740 TTTCGCTGTGGA 84751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618433522494520