Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq123 233 2e-56
seq85 116 5e-21
>seq123
Length=109856
Score = 233 bits (258), Expect = 2e-56
Identities = 552/822 (67%), Gaps = 15/822 (2%)
Strand=Plus/Minus
Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811
|||||||| || ||||| ||||||||||| || ||| ||||||||||||||||| |||
Sbjct 48257 GTGTACTCAATGATTTCTGTGCACAAGTTGGAGGACTTGATGGTGCCCAAGTTCTTCTGA 48198
Query 118812 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871
|| ||| |||| || || |||||||| |||||| |||| | || ||||| || |||
Sbjct 48197 TTACTTTTTCTGTTGCAGGCGTCCTTGTAGAGCATGAATGGGTTTCCAGTCTCAGTCTGG 48138
Query 118872 GACTTGAGAATAGCCTTCCA-GACATCGGCAGCTGGCACAGTGGC-GTTGG-CTCGCCCC 118928
| || | || || | ||| || || | || | | || | || || |||| ||
Sbjct 48137 GCCTCCAAGATGGCATACCACAACTTCTGTGCCTTG---ATTGTCTGTCGGCCTCGGCCT 48081
Query 118929 TCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCT 118988
|| | ||| ||||| | | || || || ||||| ||||| | || || | |||
Sbjct 48080 TCCTTCTCATACTTCTCGAACAGAGCCTCGAACTCCTCACCGTAGCAGTCAGATAAACCT 48021
Query 118989 GGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAG 119048
|| || | | ||||||||||||| ||| | || | ||||||||||||||||||
Sbjct 48020 GGAGCTTCGTTGGGGCAGAAGAGAGTCCAGTCTCCGTTTTTCTCAACCCGCTTCATGAAC 47961
Query 119049 AGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGA 119108
|| ||||| ||||||| || | || | ||| ||| ||| ||||||| | || ||
Sbjct 47960 AGATCTGGAGTCCAGAGAGCGTAAAACAAATCACGAGCACGAACTTCTTCCTTTCCGTGG 47901
Query 119109 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCG 119168
|| || | | || | || | || ||| |||||||| || || ||||| || ||
Sbjct 47900 TTCTTCCGGAGGTTCAGCCACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAACGGCA 47841
Query 119169 ATTG-ACC---CCTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATAC 119224
| | ||| || | | || |||||| || || | ||||| || ||| ||
Sbjct 47840 AAGGCACCAGGTCTCTTGTTG-CCGCCCTGGTCGACGTATCGAGCAGTATTGTCAAAGAC 47782
Query 119225 ACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTA 119282
|| ||||| || | | || | ||| ||| ||||| || ||| ||| ||| | |
Sbjct 47781 TCGGAGCATAGGGACAAGGCCGTTTGATGTGCCGTTTGTGCCTGCGATATAGGAGCC--A 47724
Query 119283 TTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCG 119342
| |||| | | ||||| || || |||||||| || || ||||||||| |||
Sbjct 47723 GTCGCTCGAATTTTGTGGACGTTCAATCCAATACCGCCGGCATTCTTTGAGATCATGGCG 47664
Query 119343 CACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAG 119402
|| | | || | ||||||| || ||||||||||| |||| | |||| | |||
Sbjct 47663 CAGGTCTTTAGCGTATCGTAGATTCCCTCGATCGAGTCCTCCTTCATGTCGATCAAGAAA 47604
Query 119403 CAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATG 119462
|| |||||||||| | ||||| || || |||||||| || || | ||||| ||
Sbjct 47603 CATGATGACATTTGAGCATTTGGTGTGCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGTG 47544
Query 119463 AACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGA 119522
||||| |||||||| | ||| ||||| | ||| || ||||| || |||
Sbjct 47543 AACATCTTCTGGGACATGAGATTGTATGTCTCAATGACCTTCTCGATATCTTCTCCATGA 47484
Query 119523 ATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCC 119564
|| || | || || ||||| | ||||| || ||| |||||
Sbjct 47483 ATGCCAACAGACACGCGCATCAGCATGTGCTGTGGTCTTTCC 47442
>seq85
Length=245923
Score = 116 bits (128), Expect = 5e-21
Identities = 217/312 (70%), Gaps = 10/312 (3%)
Strand=Plus/Plus
Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075
||||| || ||| | |||||||| |||||||| ||||| || |||||| || ||
Sbjct 84445 GCAAAGTCGGTGTGCATGCCCTCGTCCCGGGAGATAAGTTCGTTGGAGAAGGTAAGGCCG 84504
Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135
||||||||||| |||||||| | |||||| || | || ||||| |||||||||||
Sbjct 84505 GGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATA 84564
Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC---A 130192
|| |||||| || || || | ||||||| ||||||| ||||| | ||| |
Sbjct 84565 CCTTCCACAGCGGCAAAGGCGACCAGACGCTGGGCAAAGG---TGGACTCTCGATCTGAA 84621
Query 130193 AACCACTTCATCGCCCACTGCGCCTT-TTTCTCGATACACGGGACGGTCTGGATCGCTTC 130251
| ||| | ||||| | || || ||||| || || || | || | ||| || ||
Sbjct 84622 ATCCAGCGGAGAGCCCATTCAGCTTTCTTTCT-AATGCAAGGAATTGTATCGATGGCGTC 84680
Query 130252 AAAGAGTTCCT-TCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATG 130310
||||| | | ||||| || ||| ||||| ||||| | || ||||| ||| ||
Sbjct 84681 GAAGAGGTATTGTCTTTGCT-TTGGCTCTTTAATGTATGTGTCAATGAGAAGTGAGTACA 84739
Query 130311 TTTCGCCATGGA 130322
|||||| ||||
Sbjct 84740 TTTCGCTGTGGA 84751
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618433522494520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |