Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq123 286 4e-72 seq85 156 5e-33 seq69 102 1e-16 >seq123 Length=109856 Score = 286 bits (316), Expect = 4e-72 Identities = 1144/1771 (65%), Gaps = 65/1771 (4%) Strand=Plus/Plus Query 104215 GGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGA 104274 ||||| |||||| ||||| | ||||||||| | | || |||||||| ||||| || || Sbjct 47442 GGAAAGACCACAGCACATGCTGATGCGCGTGTCTGTTGGCATTCATGGAGAAGATATCGA 47501 Query 104275 TTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAAC 104334 ||| | ||||||||| | |||||||| ||||||| ||||| | || || Sbjct 47502 GAAGGTCATTGAGACATACAATCTCATGTCCCAGAAGATGTTCACACACGCTTCGCCCAC 47561 Query 104335 CCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAA 104394 |||||||||||| || ||||||| | |||||||| || ||| | |||| || || Sbjct 47562 CCTCTTCAATGCAGGCACACCAAATGCTCAAATGTCATCATGTTTCTTGATCGACATGAA 47621 Query 104395 GGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTG 104454 ||||||||| ||| | || ||||| | || || | | || || ||||||||| Sbjct 47622 GGAGGACTCGATCGAGGGAATCTACGATACGCTAAAGACCTGCGCCATGATCTCAAAGAA 47681 Query 104455 GGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCG-G 104512 || || |||||||| || || |||| | | |||| | | ||| ||| ||| Sbjct 47682 TGCCGGCGGTATTGGATTGAACGTCCACAAAATTCGAGCGACT--GGCTCCTATATCGCA 47739 Query 104513 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 104572 || ||||| || |||| | || || | || ||||| || || ||| || || || Sbjct 47740 GGCACAAACGGCACATCAAACGGCCTTGTCCCTATGCTCCGAGTCTTTGACAATACTGCT 47799 Query 104573 CGCTATGTAAATCAAGCTGGGCGTCGA-AAGGGATCT------ATCGCAGTCTATCTTGA 104625 || || | || | | ||||| | | ||| || || | || || || ||||| Sbjct 47800 CGATACG----TCGACCAGGGCGGCAACAAGAGACCTGGTGCCTTTGCCGTTTACCTTGA 47855 Query 104626 GCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGA 104685 ||| |||||||| ||| || | |||| || | | || ||||| || | || || Sbjct 47856 GCCCTGGCACGCCGATGTCTTTGAGTGGCTGAACCTCCGGAAGAACCACGGAAAGGAAGA 47915 Query 104686 GGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 104744 | | |||| || ||| | || | ||||||||||| ||||||||| ||||||||| | | Sbjct 47916 AGTTC-GTGCTCGTGATTTGTTTTACGCTCTCTGGACTCCAGATCTGTTCATGAAGCGGG 47974 Query 104745 TTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATG 104804 ||||| | | || | ||| ||||||| || || || | || || ||| | || || Sbjct 47975 TTGAGAAAAACGGAGACTGGACTCTCTTCTGCCCCAACGAAGCTCCAGGTTTATCTGACT 48034 Query 104805 CCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTC--GGGCGAC 104862 | ||||||||||| || || || | | ||||| ||| | ||||| | || |||| Sbjct 48035 GCTACGGTGAGGAGTTCGAGGCTCTGTTCGAGAAGTATGAGAAGGAAGGCCGAGGCCGAC 48094 Query 104863 TGCGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 104921 ||| | | || | || | ||||| | || || | || | || || ||||||| Sbjct 48095 --AGACAAT-CAAGGCACAGAAGTTGTGGTATGCCATCTTGGAGGCCCAGACTGAGACTG 48151 Query 104922 GTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 104981 | | |||| |||||| ||||| |||||||| ||| ||| |||||||| ||||| |||| Sbjct 48152 GAAACCCATTCATGCTCTACAAGGACGCCTGCAACAGAAAAAGTAATCAGAAGAACTTGG 48211 Query 104982 GTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGA 105041 | |||||| ||||| | || ||||||||| | || | || | | || ||| Sbjct 48212 GCACCATCAAGTCCTCCAACTTGTGCACAGAAATCATTGAGTACACCGCCCCTGACGAGG 48271 Query 105042 CGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG- 105100 || || || || | || || | ||| | || | || || ||| || | ||| Sbjct 48272 TCGCCGTCTGCAATTTGGCTTCTGTTGCTTTGCCATCTTTCGTTGA-CCA-AGTCGAAGG 48329 Query 105101 -ACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAG 105159 || ||| | || ||| ||||| || | | | || || ||||| |||| Sbjct 48330 TCAATATGACTTTGGCCGACTGCACGAGGTCATCCAGGTCATGACTAAGAACCTGAACAA 48389 Query 105160 AGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCG 105219 | || || | || | |||||||| | || | || || | |||||||| Sbjct 48390 GATCATCGAGATCAACTACTACCCCGTCCCGGAAGCGAGAAAGAGCAACTTCAGACACCG 48449 Query 105220 TCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT---CTTTGTCGCCACGC 105276 || |||||||| |||||||| || || || |||| ||| || ||| | | | | Sbjct 48450 ACCCATTGGTCTTGGTGTTCAAGGCCTTGCTGATGCTTTCCTTGCCCTTAGACTGC---C 48506 Query 105277 ATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGC 105336 || ||||| |||||| | | |||| | ||||| ||||| || || ||||| Sbjct 48507 GTTCGATTCTCCCGAAGCAAGACAGCTCAACATTCAAATATTCGAGACTATCTACCACGC 48566 Query 105337 CGCTCTTGAGGCGAGTTCA---GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGA 105393 ||||| | | |||| || | || ||| ||||||||| ||||||| ||| Sbjct 48567 AGCTCT---GACAGCTTCATGTGACCTTGCGAAGGAACTTGGTCCATACGAAACCTATGA 48623 Query 105394 GGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCA---- 105449 ||| || || ||| ||||| ||| || | || | |||| ||| |||| Sbjct 48624 GGGCTCGCCCATTTCTCAAGGTCAGCTACAGTACGACCTCTGGG-GTCTGACACCAACAG 48682 Query 105450 AGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACA 105509 | ||| | |||||||| || | || | || || | ||| |||| || Sbjct 48683 ACCTT---TGGGACTGGGAGGCCTTGAAAGCCAAGATTGCTCAGTATGGTGTTCGAAATT 48739 Query 105510 GTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAAT 105569 ||| || | || || ||||| || ||||| || | || || ||||| |||||||||| Sbjct 48740 CTCTTCTTGTCGCACCCATGCCGACCGCCTCTACGTCGCAGATATTGGGCAATAATGAAT 48799 Query 105570 GCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGA 105629 |||| || || || || | |||||||| | | | || || || ||| | Sbjct 48800 GCTTCGAGCCATATACATCCAACATCTACTCCCGTCGTGTGTTAGCAGGCGAATTTCAGG 48859 Query 105630 TTGTCAA--CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATAT 105687 | ||||| || | || | | || ||| || |||| || ||||| | | || Sbjct 48860 TCGTCAATCCATG--GCTGCTCAAAGATCTCGTTGATCTTGGCCTGTGGTCGGACAACAT 48917 Query 105688 GAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGA 105747 |||| | || | | ||| ||||| ||||| || | | ||||||| || Sbjct 48918 GAAGAACAGAATCATTGCCGAGGGCGGTTCAATTCAGAACGTACCAAACATTCCAACCGA 48977 Query 105748 AATTAAGAAGTTGTACCGCACAGTTTGGGAAATC---AAGATGAAGGATGTCATTGACAT 105804 || || | ||| || || ||||| ||| ||| ||| | |||| | || Sbjct 48978 CATCAAAGCACTCTACAAGACTGTCTGGGAGATCTCTCAGA-GAA--CTATCATCCAGAT 49034 Query 105805 GGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAA 105862 |||||| ||||| ||| ||||||||||| ||||| ||| |||| ||||| | Sbjct 49035 GGCCGCTGATCGAGGTGCCTTCATTGATC--AGTCACAGTCGTTGAA--CATTCATCTGA 49090 Query 105863 AG--TCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCA 105920 || ||||| ||| |||| || ||||||||||| | | ||||| | |||||||| Sbjct 49091 AGGAACCAACCATGGGCAAGATCACTTCTATGCACTTCGCTGGCTGGAAAATGGGTCTCA 49150 Query 105921 AAACGGGGATGTATTACCTCCGATCTAAGGC 105951 | || || ||||| || || ||| | | ||| Sbjct 49151 AGACTGGCATGTACTATCTTCGAACCATGGC 49181 >seq85 Length=245923 Score = 156 bits (172), Expect = 5e-33 Identities = 183/246 (74%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 ||||| || |||||| | ||| |||| || ||| ||||||||| || |||||| | Sbjct 84686 CTCTTCGACGCCATCGATACAATTCCTTGCATTAGAAAGAAAGCTGAATGGGCTCTCCGC 84627 Query 94774 TGGTTT---GATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTT 94830 ||| || ||| | |||| ||||||| |||| || |||| ||||| ||| Sbjct 84626 TGGATTTCAGATCGAGAGTCCA---CCTTTGCCCAGCGTCTGGTCGCCTTTGCCGCTGTG 84570 Query 94831 GAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTC 94890 || |||||||||||||| || |||||| | | || | ||||||||||||||||||||| Sbjct 84569 GAAGGTATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTC 84510 Query 94891 ATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAG 94950 ||||| || || |||||||||||| |||||||| || |||||||| | ||| || Sbjct 84509 ATGCCCGGCCTTACCTTCTCCAACGAACTTATCTCCCGGGACGAGGGCATGCACACCGAC 84450 Query 94951 TTTGCG 94956 |||||| Sbjct 84449 TTTGCG 84444 >seq69 Length=644404 Score = 102 bits (112), Expect = 1e-16 Identities = 170/243 (70%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 154106 TATGGGCGTGTTGCGCCACGATCTGGTCTCGCTGTGAAA-CATGGTATCCAAGTTGGTGC 154164 ||||||||||| || ||||| || || ||||| || ||| ||| ||| | || || Sbjct 381192 TATGGGCGTGTAGCTCCACGCTCAGGACTCGC-GTCAAAGCATTTCATCGACACAGGCGC 381134 Query 154165 GGGTGTTGTTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTTTTCAATCACGGAGA 154224 ||||| ||||| ||||||||| || ||||||||||| | | ||||| | | || Sbjct 381133 AGGTGTGATTGATGCCGACTACAGAGGAGAAGTCAAAGTATTGTTGTTCAACTTCAGTGA 381074 Query 154225 CAAAGACTTTGAGGTAAAGAGGGGTGAGCGCATCGCACAACTTGTTCTTGAGAGGTGTGA 154284 || |||| |||||| ||| ||| || || ||||||||| | || ||||| ||| || Sbjct 381073 CACCGACTATGAGGTGAAGCAGGGAGAACGAATCGCACAATTAGTCCTTGAAAGGATTGT 381014 Query 154285 GACACCCGATGTGGAGGAAATTGGCTTCCTTGAAGAGACGGAGAGGGGTGCAGGCGGATT 154344 ||||| || || | || | | ||| || | | | ||| ||||| ||||| || Sbjct 381013 CACACCTGAGGTCGTAGAGGTCGAAGCCCTGGAGGCAAGTGTGAGAGGTGCCGGCGGCTT 380954 Query 154345 TGG 154347 ||| Sbjct 380953 TGG 380951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259217905080