Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq17 325 1e-83
seq154 179 1e-39
seq25 159 1e-33
>seq17
Length=466808
Score = 325 bits (360), Expect = 1e-83
Identities = 948/1452 (65%), Gaps = 16/1452 (1%)
Strand=Plus/Plus
Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256
|||| || || || ||||| ||||| || || || || || | | ||| | ||||
Sbjct 246605 CCGCAATCGGTATTGATTTGGGTACCACATACTCCTGCGTGGGTATTTTCAGAGATGACA 246664
Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316
| | ||||| ||||| ||||| ||||| || |||| || || || | || || || |
Sbjct 246665 GAATCGAAATCATTGCCAATGACCAAGGCAATCGAACTACCCCCTCTTTTGTCGCTTTCA 246724
Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376
|||| || || | |||| ||||| |||||||| || || | || || ||| |
Sbjct 246725 CCGACACCGAAAGACTGATCGGTGACTCTGCAAAGAACCAGGTCGCCATGAACCCAGCCA 246784
Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACA--- 349432
| || || || || || || ||||| || ||| | ||||| | | | || |
Sbjct 246785 ACACAGTCTTCGACGCGAAACGACTGATAGGTCGCAAGTTC----GCCGATCCTGAAGTT 246840
Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492
||| | ||| | || || || || || | || | | | ||| |||| || ||| |
Sbjct 246841 CAAGCAGATATGAAGCACTTCCCCTTCAAGGTCCT-CGACAAG--GGTGGCAAGCCAGTG 246897
Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATG 349552
|| || |||| || |||||| | ||| ||| ||| ||||| || ||||| |||
Sbjct 246898 ATCTCTGTCGAATTCAAGGGTGAAGAGAAAACCTTTACACCAGAAGAGATCTCATCGATG 246957
Query 349553 GTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCT 349612
||| | || ||| || | ||| ||| |||| | |||| ||||| | |||||
Sbjct 246958 GTTCTTACCAAGATGCGAGAGACTGCAGAATCATACCTTGGTGGTACAGTCAACAATGCT 247017
Query 349613 GTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGC 349672
|| |||||||| ||||| || || ||||| | ||| | || || || ||||||||
Sbjct 247018 GTCATTACTGTCCCAGCATACTTCAATGACTCTCAGAGACAGGCCACCAAGGATGCTGGT 247077
Query 349673 AGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCA 349732
|| || || || || ||||| | || || || || || || || || || || ||
Sbjct 247078 CTGATCGCTGGCTTGAACGTTCTTCGGATCATCAACGAGCCAACCGCAGCTGCCATCGCC 247137
Query 349733 TATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792
|| || || || |||| || ||| || ||| | || || ||||| || || |||
Sbjct 247138 TACGGTCTCGACAAAAAGACTGAGGGTGAGCGAAACGTCCTCATCTTTGACTTGGGCGGT 247197
Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852
||||| || ||||| || || | || | |||||||| || ||||| || || | |||
Sbjct 247198 GGTACCTTCGATGTGTCCCTGTTGACTATCGAAGAGGGTATCTTTGAGGTCAAGTCTACT 247257
Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTT 349912
|| |||||||| || | ||||| ||||| || || || | ||||| || |||||
Sbjct 247258 GCCGGTGATACTCACTTGGGTGGTGAAGACTTCGACAACAGACTCGTCAACCACTTTGTC 247317
Query 349913 AAAGAATTTAAGCGTCAAGCTAAA-ATTGATATTGGAGATAATCCTAGAGCAATGCGTCG 349971
|| || || ||| | |||| || | || || || | | || | || ||
Sbjct 247318 AACGAGTTCAAGAGA-AAGCACAAGAAAGACCTTTCTTCCAACGCACGTGCTCTTCGACG 247376
Query 349972 CCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTAT 350031
|| |||| || || ||||| || ||||| | | ||||| | | || || |||||
Sbjct 247377 TCTCCGAACCGCTTGCGAACGCGCCAAGCGAACTCTCTCATCGTCCGCACAGACATCTAT 247436
Query 350032 TGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTT 350091
|||||| || || || ||| || | || |||| | | || ||||| || || || ||
Sbjct 247437 TGAAATCGACTCCCTATATGAGGGTATCGACTTCTATACCTCCATTACTCGAGCCCGATT 247496
Query 350092 TGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAA 350151
|||||| || || ||| ||||| ||| | || ||||| || || || ||| |
Sbjct 247497 TGAAGAGTTGTGCCAGGACCTTTTCAGATCCACCATGGAGCCAGTTGAGCGAGTGCTCCG 247556
Query 350152 AGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACG 350211
|||||| || || ||| | | | || | || || ||||||||||| || ||
Sbjct 247557 AGATGCCAAGATTGACAAGTCTTCCGTCCACGAGATTGTCTTGGTTGGTGGTTCCACTCG 247616
Query 350212 TATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATC 350271
|| |||| | | || | | | ||||| || || || ||||| || || | ||
Sbjct 247617 AATCCCAAGAATCCAGAAACTCGTCTCTGATTTCTTCAACGGCAAGGAGCCCAACAAGTC 247676
Query 350272 AATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGG 350331
|| || || ||||| ||||| ||||| |||||||| || ||||| |||| || |||||
Sbjct 247677 GATCAACCCCGATGAGGCTGTCGCATACGGTGCTGCCGTCCAGGCTGCTATCTTGTCTGG 247736
Query 350332 AAATAAGAGTTCTAA---AATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCT 350388
| ||| ||| || || | || | || || || || || | ||||| || |
Sbjct 247737 AGATACTTCTTCGAAGTCAACCAACGAGATCTTGCTGCTCGACGTTGCACCACTGTCTAT 247796
Query 350389 TGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACC 350448
|| | || ||| | || | || |||||| | || |||| | || | ||
Sbjct 247797 CGGTATCGAGACTGCAGGCGGTGTCATGACTCCATTGATCAAGCGAAACACCACCATCCC 247856
Query 350449 TACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCA 350508
|| || |||||| | || || ||||| || | || || ||||||| || |||||
Sbjct 247857 AACCAAGAAGTCCGAGACATTCTCTACCTTCTCTGACAACCAGCCAGGTGTCCTCATTCA 247916
Query 350509 AGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCT 350568
|| || || ||||| ||||| || || || || || ||| || || | || ||
Sbjct 247917 GGTCTTCGAGGGTGAGCGTGCCCGAACCAAGGACAACAATCTGCTCGGCAAGTTCGAACT 247976
Query 350569 AAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGA 350628
| || |||||| || |||| ||||||||||| || ||| | |||||| ||||
Sbjct 247977 CTCCGGTATCCCACCAGCTCCCCGAGGTGTTCCTCAGATCGAGGTCACCTTCGATGTTGA 248036
Query 350629 TTCAAATGGTAT 350640
| | ||||||||
Sbjct 248037 TGCCAATGGTAT 248048
Score = 183 bits (202), Expect = 9e-41
Identities = 376/552 (68%), Gaps = 8/552 (1%)
Strand=Plus/Minus
Query 183243 aaaaTTGCAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGA 183302
|| || ||||| || || || ||||| ||||| ||||| ||||| ||||| || || |
Sbjct 247730 AAGATAGCAGCCTGGACGGCAGCACCGTATGCGACAGCCTCATCGGGGTTGATCGA-CTT 247672
Query 183303 GATAAT-TCTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGT 183361
| | || ||||| || || || || || | | || || ||| |||| |||| |||
Sbjct 247671 GTTGGGCTCCTTGCCGTTGAAGAAATCAGAGACGAGTTTCTGGATTCTTGGGATTCGAGT 247612
Query 183362 TGAACCACCGACTAATACTACTTCATCGAT--ATTACTTTTACTAATTTGTGAATCTTTT 183419
|||||||| || || || | || | || | |||| | ||| | | ||||
Sbjct 247611 GGAACCACCAACCAAGACAATCTCGTGGACGGAAGACTTGTC--AATCTTGGCATCTCGG 247554
Query 183420 AAAACTTTTTCAACAGGGTCCATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAAT 183479
| ||| ||||| || ||||| || ||| || | || || |||||||| |||
Sbjct 247553 AGCACTCGCTCAACTGGCTCCATGGTGGATCTGAAAAGGTCCTGGCACAACTCTTCAAAT 247494
Query 183480 CTTGCTCTAGTTAAAGATGaaaaaaaGTCAATACCATTATATAAGGAATCAATTTCAATC 183539
| |||| ||| | || | | | ||||| ||||| | ||||| ||| || ||||||||
Sbjct 247493 CGGGCTCGAGTAATGGAGGTATAGAAGTCGATACCCTCATATAGGGAGTCGATTTCAATA 247434
Query 183540 GATGTTTGTGTAGATGATGATAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGA 183599
||||| |||| || ||||| | |||| || || ||||| || || |||| || ||
Sbjct 247433 GATGTCTGTGCGGACGATGAGAGAGTTCGCTTGGCGCGTTCGCAAGCGGTTCGGAGACGT 247374
Query 183600 CGTAATGATCTTGGATTATCTGTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATA 183659
|| | | | || || | || |||| || || ||||| || || || | | |
Sbjct 247373 CGAAGAGCACGTGCGTTGGAAGAAAGGTCTTTCTTGTGCTTTCTCTTGAACTCGTTGACA 247314
Query 183660 AAATG-TTGAAGTAATCTTGTATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGT 183718
|| || |||| | | ||| | || || ||||||||||| || || ||||| || |||||
Sbjct 247313 AAGTGGTTGACG-AGTCTGTTGTCGAAGTCTTCACCACCCAAGTGAGTATCACCGGCAGT 247255
Query 183719 AGCTTTAACTTCAAATATTCCGTCTTCAATATTTAAAATTGATACATCAAATGTACCACC 183778
|| || || ||||| || || ||||| ||| | || | || ||||| || ||||||||
Sbjct 247254 AGACTTGACCTCAAAGATACCCTCTTCGATAGTCAACAGGGACACATCGAAGGTACCACC 247195
Query 183779 ACCCAAATCAAA 183790
||||| |||||
Sbjct 247194 GCCCAAGTCAAA 247183
>seq154
Length=71981
Score = 179 bits (198), Expect = 1e-39
Identities = 183/236 (78%), Gaps = 2/236 (1%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| ||| |||||||| | || |||||| || |||||||| || || || || ||||| |
Sbjct 41252 TTTGCATGCCACCACGAAGTCGTAGAACTAGGTGAAGAGTCGATTCCTTCTGGATATTGT 41193
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
||||| || ||||| || ||||| ||||| || ||||||||||| || || ||||| |
Sbjct 41192 AATCACTCAAAGTTCGGCCGTCTTCCAGTTGCTTACCAGCAAAGATGAGTCGCTGCTGGT 41133
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGAT 140681
| |||||||| || || |||||||| ||||| ||| || ||||| || || | ||| ||
Sbjct 41132 CGGGAGGAATACCCTCCTTATCCTGGATTTT-GCTCTTGACATTGTCGATGGTATCGGAA 41074
Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| ||||| || || || | |||||| || || | ||| || ||||||||||||||
Sbjct 41073 GACTCAACCTCGAGAGTGATTGTCTTACCAGTCAATGTCTTCACAAAAATCTGCAT 41018
Score = 176 bits (194), Expect = 1e-38
Identities = 180/235 (77%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| ||| ||||| || ||||| || ||||| || || ||||||||||| ||||| || |
Sbjct 41480 TTTGCATGCCACCTCGCAATCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGT 41421
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
|||| || || ||||| ||||| || || ||||| || || ||||| | || ||||| |
Sbjct 41420 AATCTGACAAGGTTCGACCATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGT 41361
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || ||||| ||||| || || || ||||| | || || ||||| || | ||||||||
Sbjct 41360 CTGGTGGAATACCTTCCTTGTCTTGGATTTTCGACTTAACGTTATCGATGGTATCAGATG 41301
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||| ||||| ||||| | || || || || || ||||| |||||||| |||||
Sbjct 41300 ATTCCACTTCGAGTGTTATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCAT 41246
Score = 134 bits (148), Expect = 4e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585
||||| | || || ||| ||| || ||||| || |||||||| | || || || ||
Sbjct 41685 AGAACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCAGAAAGAGTACGACCGTCC 41626
Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645
|| | ||| ||||| |||||||| || ||||||||||| || ||||| || || || |||
Sbjct 41625 TCCAATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGCGGAATACCCTCCTTGTCC 41566
Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705
|| || || | |||||||| || || | ||||| ||||| || | |||| ||||
Sbjct 41565 TGGATCTTGGACTTTACATTGTCGATAGTGTCAGAGCTCTCAACCTCCAAGGTAATTGTC 41506
Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| ||||| || || ||||| |||||
Sbjct 41505 TTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 41474
Score = 120 bits (132), Expect = 9e-22
Identities = 155/210 (74%), Gaps = 3/210 (1%)
Strand=Plus/Minus
Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589
|||| || || || || ||||| ||||| || || || || || || || |||||||
Sbjct 40996 CAAG-TGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCAA 40938
Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649
| || || ||||| || || ||||||||||| ||||||||||| || || || || ||||
Sbjct 40937 GCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGAA 40878
Query 140650 TTTTAGCT-TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTT 140708
| || ||| || ||||| || |||| ||| | ||| || ||||| || | |||||
Sbjct 40877 TCTT-GCTCTTGACATTGTCGATCGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTTG 40819
Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCATT 140738
|| || || || || || || |||||||||
Sbjct 40818 CCAGTCAGAGTCTTGACGAAGATCTGCATT 40789
>seq25
Length=374142
Score = 159 bits (176), Expect = 1e-33
Identities = 253/361 (70%), Gaps = 5/361 (1%)
Strand=Plus/Minus
Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591
|| |||||||| || | |||||| | | || ||||||||| | ||||| |||||| |
Sbjct 83821 CCTGAAGAAATCTCGGCCATGGTTCTTGGAAAGATGAAGGAAGTGGCTGAGGCATATGTT 83762
Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651
|| ||| ||| || | || || ||||||| || ||||| || || ||||||||||||
Sbjct 83761 GGCAAAAAAGTTACCCACGCAGTCGTTACTGTCCCCGCCTACTTCAACGATGCCCAGCGT 83702
Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711
|| |||||||| ||||| | || || || || | ||| || || | |||| |||
Sbjct 83701 CAAGCGACAAAAGACGCTGGTACAATCGCTGGTTTGACTGTCCTCCGAGTCGTTAACGAA 83642
Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaa----a 349767
|| || ||||| || ||||| || || | || || || || ||||||| || |
Sbjct 83641 CCAACGGCTGCGGCTATTGCTTACGGTTTGGACAAGATTGCCGA-CAAGAAAGAACGACA 83583
Query 349768 TATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGA 349827
|| | | | ||| | ||||| || ||||| ||||| ||||| || | | || ||
Sbjct 83582 AATCGTCGTATACGATCTCGGTGGAGGCACTTTCGATGTCTCACTCCTTTCCGTGGATGA 83523
Query 349828 GGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887
|| |||| ||||| ||||| || ||||| || ||||||||||| || || || ||
Sbjct 83522 AGGTGTTTTCGAAGTCCTCGCAACCGCAGGTGACACCCATCTTGGTGGTGAGGACTTCGA 83463
Query 349888 T 349888
|
Sbjct 83462 T 83462
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515250187119251
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |