Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq17 325 1e-83 seq154 179 1e-39 seq25 159 1e-33 >seq17 Length=466808 Score = 325 bits (360), Expect = 1e-83 Identities = 948/1452 (65%), Gaps = 16/1452 (1%) Strand=Plus/Plus Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256 |||| || || || ||||| ||||| || || || || || | | ||| | |||| Sbjct 246605 CCGCAATCGGTATTGATTTGGGTACCACATACTCCTGCGTGGGTATTTTCAGAGATGACA 246664 Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316 | | ||||| ||||| ||||| ||||| || |||| || || || | || || || | Sbjct 246665 GAATCGAAATCATTGCCAATGACCAAGGCAATCGAACTACCCCCTCTTTTGTCGCTTTCA 246724 Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376 |||| || || | |||| ||||| |||||||| || || | || || ||| | Sbjct 246725 CCGACACCGAAAGACTGATCGGTGACTCTGCAAAGAACCAGGTCGCCATGAACCCAGCCA 246784 Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACA--- 349432 | || || || || || || ||||| || ||| | ||||| | | | || | Sbjct 246785 ACACAGTCTTCGACGCGAAACGACTGATAGGTCGCAAGTTC----GCCGATCCTGAAGTT 246840 Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492 ||| | ||| | || || || || || | || | | | ||| |||| || ||| | Sbjct 246841 CAAGCAGATATGAAGCACTTCCCCTTCAAGGTCCT-CGACAAG--GGTGGCAAGCCAGTG 246897 Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATG 349552 || || |||| || |||||| | ||| ||| ||| ||||| || ||||| ||| Sbjct 246898 ATCTCTGTCGAATTCAAGGGTGAAGAGAAAACCTTTACACCAGAAGAGATCTCATCGATG 246957 Query 349553 GTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCT 349612 ||| | || ||| || | ||| ||| |||| | |||| ||||| | ||||| Sbjct 246958 GTTCTTACCAAGATGCGAGAGACTGCAGAATCATACCTTGGTGGTACAGTCAACAATGCT 247017 Query 349613 GTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGC 349672 || |||||||| ||||| || || ||||| | ||| | || || || |||||||| Sbjct 247018 GTCATTACTGTCCCAGCATACTTCAATGACTCTCAGAGACAGGCCACCAAGGATGCTGGT 247077 Query 349673 AGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCA 349732 || || || || || ||||| | || || || || || || || || || || || Sbjct 247078 CTGATCGCTGGCTTGAACGTTCTTCGGATCATCAACGAGCCAACCGCAGCTGCCATCGCC 247137 Query 349733 TATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792 || || || || |||| || ||| || ||| | || || ||||| || || ||| Sbjct 247138 TACGGTCTCGACAAAAAGACTGAGGGTGAGCGAAACGTCCTCATCTTTGACTTGGGCGGT 247197 Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852 ||||| || ||||| || || | || | |||||||| || ||||| || || | ||| Sbjct 247198 GGTACCTTCGATGTGTCCCTGTTGACTATCGAAGAGGGTATCTTTGAGGTCAAGTCTACT 247257 Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTT 349912 || |||||||| || | ||||| ||||| || || || | ||||| || ||||| Sbjct 247258 GCCGGTGATACTCACTTGGGTGGTGAAGACTTCGACAACAGACTCGTCAACCACTTTGTC 247317 Query 349913 AAAGAATTTAAGCGTCAAGCTAAA-ATTGATATTGGAGATAATCCTAGAGCAATGCGTCG 349971 || || || ||| | |||| || | || || || | | || | || || Sbjct 247318 AACGAGTTCAAGAGA-AAGCACAAGAAAGACCTTTCTTCCAACGCACGTGCTCTTCGACG 247376 Query 349972 CCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTAT 350031 || |||| || || ||||| || ||||| | | ||||| | | || || ||||| Sbjct 247377 TCTCCGAACCGCTTGCGAACGCGCCAAGCGAACTCTCTCATCGTCCGCACAGACATCTAT 247436 Query 350032 TGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTT 350091 |||||| || || || ||| || | || |||| | | || ||||| || || || || Sbjct 247437 TGAAATCGACTCCCTATATGAGGGTATCGACTTCTATACCTCCATTACTCGAGCCCGATT 247496 Query 350092 TGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAA 350151 |||||| || || ||| ||||| ||| | || ||||| || || || ||| | Sbjct 247497 TGAAGAGTTGTGCCAGGACCTTTTCAGATCCACCATGGAGCCAGTTGAGCGAGTGCTCCG 247556 Query 350152 AGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACG 350211 |||||| || || ||| | | | || | || || ||||||||||| || || Sbjct 247557 AGATGCCAAGATTGACAAGTCTTCCGTCCACGAGATTGTCTTGGTTGGTGGTTCCACTCG 247616 Query 350212 TATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATC 350271 || |||| | | || | | | ||||| || || || ||||| || || | || Sbjct 247617 AATCCCAAGAATCCAGAAACTCGTCTCTGATTTCTTCAACGGCAAGGAGCCCAACAAGTC 247676 Query 350272 AATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGG 350331 || || || ||||| ||||| ||||| |||||||| || ||||| |||| || ||||| Sbjct 247677 GATCAACCCCGATGAGGCTGTCGCATACGGTGCTGCCGTCCAGGCTGCTATCTTGTCTGG 247736 Query 350332 AAATAAGAGTTCTAA---AATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCT 350388 | ||| ||| || || | || | || || || || || | ||||| || | Sbjct 247737 AGATACTTCTTCGAAGTCAACCAACGAGATCTTGCTGCTCGACGTTGCACCACTGTCTAT 247796 Query 350389 TGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACC 350448 || | || ||| | || | || |||||| | || |||| | || | || Sbjct 247797 CGGTATCGAGACTGCAGGCGGTGTCATGACTCCATTGATCAAGCGAAACACCACCATCCC 247856 Query 350449 TACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCA 350508 || || |||||| | || || ||||| || | || || ||||||| || ||||| Sbjct 247857 AACCAAGAAGTCCGAGACATTCTCTACCTTCTCTGACAACCAGCCAGGTGTCCTCATTCA 247916 Query 350509 AGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCT 350568 || || || ||||| ||||| || || || || || ||| || || | || || Sbjct 247917 GGTCTTCGAGGGTGAGCGTGCCCGAACCAAGGACAACAATCTGCTCGGCAAGTTCGAACT 247976 Query 350569 AAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGA 350628 | || |||||| || |||| ||||||||||| || ||| | |||||| |||| Sbjct 247977 CTCCGGTATCCCACCAGCTCCCCGAGGTGTTCCTCAGATCGAGGTCACCTTCGATGTTGA 248036 Query 350629 TTCAAATGGTAT 350640 | | |||||||| Sbjct 248037 TGCCAATGGTAT 248048 Score = 183 bits (202), Expect = 9e-41 Identities = 376/552 (68%), Gaps = 8/552 (1%) Strand=Plus/Minus Query 183243 aaaaTTGCAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGA 183302 || || ||||| || || || ||||| ||||| ||||| ||||| ||||| || || | Sbjct 247730 AAGATAGCAGCCTGGACGGCAGCACCGTATGCGACAGCCTCATCGGGGTTGATCGA-CTT 247672 Query 183303 GATAAT-TCTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGT 183361 | | || ||||| || || || || || | | || || ||| |||| |||| ||| Sbjct 247671 GTTGGGCTCCTTGCCGTTGAAGAAATCAGAGACGAGTTTCTGGATTCTTGGGATTCGAGT 247612 Query 183362 TGAACCACCGACTAATACTACTTCATCGAT--ATTACTTTTACTAATTTGTGAATCTTTT 183419 |||||||| || || || | || | || | |||| | ||| | | |||| Sbjct 247611 GGAACCACCAACCAAGACAATCTCGTGGACGGAAGACTTGTC--AATCTTGGCATCTCGG 247554 Query 183420 AAAACTTTTTCAACAGGGTCCATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAAT 183479 | ||| ||||| || ||||| || ||| || | || || |||||||| ||| Sbjct 247553 AGCACTCGCTCAACTGGCTCCATGGTGGATCTGAAAAGGTCCTGGCACAACTCTTCAAAT 247494 Query 183480 CTTGCTCTAGTTAAAGATGaaaaaaaGTCAATACCATTATATAAGGAATCAATTTCAATC 183539 | |||| ||| | || | | | ||||| ||||| | ||||| ||| || |||||||| Sbjct 247493 CGGGCTCGAGTAATGGAGGTATAGAAGTCGATACCCTCATATAGGGAGTCGATTTCAATA 247434 Query 183540 GATGTTTGTGTAGATGATGATAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGA 183599 ||||| |||| || ||||| | |||| || || ||||| || || |||| || || Sbjct 247433 GATGTCTGTGCGGACGATGAGAGAGTTCGCTTGGCGCGTTCGCAAGCGGTTCGGAGACGT 247374 Query 183600 CGTAATGATCTTGGATTATCTGTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATA 183659 || | | | || || | || |||| || || ||||| || || || | | | Sbjct 247373 CGAAGAGCACGTGCGTTGGAAGAAAGGTCTTTCTTGTGCTTTCTCTTGAACTCGTTGACA 247314 Query 183660 AAATG-TTGAAGTAATCTTGTATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGT 183718 || || |||| | | ||| | || || ||||||||||| || || ||||| || ||||| Sbjct 247313 AAGTGGTTGACG-AGTCTGTTGTCGAAGTCTTCACCACCCAAGTGAGTATCACCGGCAGT 247255 Query 183719 AGCTTTAACTTCAAATATTCCGTCTTCAATATTTAAAATTGATACATCAAATGTACCACC 183778 || || || ||||| || || ||||| ||| | || | || ||||| || |||||||| Sbjct 247254 AGACTTGACCTCAAAGATACCCTCTTCGATAGTCAACAGGGACACATCGAAGGTACCACC 247195 Query 183779 ACCCAAATCAAA 183790 ||||| ||||| Sbjct 247194 GCCCAAGTCAAA 247183 >seq154 Length=71981 Score = 179 bits (198), Expect = 1e-39 Identities = 183/236 (78%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| |||||||| | || |||||| || |||||||| || || || || ||||| | Sbjct 41252 TTTGCATGCCACCACGAAGTCGTAGAACTAGGTGAAGAGTCGATTCCTTCTGGATATTGT 41193 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 ||||| || ||||| || ||||| ||||| || ||||||||||| || || ||||| | Sbjct 41192 AATCACTCAAAGTTCGGCCGTCTTCCAGTTGCTTACCAGCAAAGATGAGTCGCTGCTGGT 41133 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGAT 140681 | |||||||| || || |||||||| ||||| ||| || ||||| || || | ||| || Sbjct 41132 CGGGAGGAATACCCTCCTTATCCTGGATTTT-GCTCTTGACATTGTCGATGGTATCGGAA 41074 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| || || || | |||||| || || | ||| || |||||||||||||| Sbjct 41073 GACTCAACCTCGAGAGTGATTGTCTTACCAGTCAATGTCTTCACAAAAATCTGCAT 41018 Score = 176 bits (194), Expect = 1e-38 Identities = 180/235 (77%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| ||||| || ||||| || ||||| || || ||||||||||| ||||| || | Sbjct 41480 TTTGCATGCCACCTCGCAATCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGT 41421 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| || || ||||| ||||| || || ||||| || || ||||| | || ||||| | Sbjct 41420 AATCTGACAAGGTTCGACCATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGT 41361 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| ||||| || || || ||||| | || || ||||| || | |||||||| Sbjct 41360 CTGGTGGAATACCTTCCTTGTCTTGGATTTTCGACTTAACGTTATCGATGGTATCAGATG 41301 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| ||||| | || || || || || ||||| |||||||| ||||| Sbjct 41300 ATTCCACTTCGAGTGTTATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCAT 41246 Score = 134 bits (148), Expect = 4e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| | || || ||| ||| || ||||| || |||||||| | || || || || Sbjct 41685 AGAACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCAGAAAGAGTACGACCGTCC 41626 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || | ||| ||||| |||||||| || ||||||||||| || ||||| || || || ||| Sbjct 41625 TCCAATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGCGGAATACCCTCCTTGTCC 41566 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || | |||||||| || || | ||||| ||||| || | |||| |||| Sbjct 41565 TGGATCTTGGACTTTACATTGTCGATAGTGTCAGAGCTCTCAACCTCCAAGGTAATTGTC 41506 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| ||||| || || ||||| ||||| Sbjct 41505 TTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 41474 Score = 120 bits (132), Expect = 9e-22 Identities = 155/210 (74%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || || || || ||||| ||||| || || || || || || || ||||||| Sbjct 40996 CAAG-TGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCAA 40938 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || ||||| || || ||||||||||| ||||||||||| || || || || |||| Sbjct 40937 GCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGAA 40878 Query 140650 TTTTAGCT-TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTT 140708 | || ||| || ||||| || |||| ||| | ||| || ||||| || | ||||| Sbjct 40877 TCTT-GCTCTTGACATTGTCGATCGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTTG 40819 Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || || || || ||||||||| Sbjct 40818 CCAGTCAGAGTCTTGACGAAGATCTGCATT 40789 >seq25 Length=374142 Score = 159 bits (176), Expect = 1e-33 Identities = 253/361 (70%), Gaps = 5/361 (1%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 || |||||||| || | |||||| | | || ||||||||| | ||||| |||||| | Sbjct 83821 CCTGAAGAAATCTCGGCCATGGTTCTTGGAAAGATGAAGGAAGTGGCTGAGGCATATGTT 83762 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || ||| ||| || | || || ||||||| || ||||| || || |||||||||||| Sbjct 83761 GGCAAAAAAGTTACCCACGCAGTCGTTACTGTCCCCGCCTACTTCAACGATGCCCAGCGT 83702 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || |||||||| ||||| | || || || || | ||| || || | |||| ||| Sbjct 83701 CAAGCGACAAAAGACGCTGGTACAATCGCTGGTTTGACTGTCCTCCGAGTCGTTAACGAA 83642 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaa----a 349767 || || ||||| || ||||| || || | || || || || ||||||| || | Sbjct 83641 CCAACGGCTGCGGCTATTGCTTACGGTTTGGACAAGATTGCCGA-CAAGAAAGAACGACA 83583 Query 349768 TATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGA 349827 || | | | ||| | ||||| || ||||| ||||| ||||| || | | || || Sbjct 83582 AATCGTCGTATACGATCTCGGTGGAGGCACTTTCGATGTCTCACTCCTTTCCGTGGATGA 83523 Query 349828 GGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 || |||| ||||| ||||| || ||||| || ||||||||||| || || || || Sbjct 83522 AGGTGTTTTCGAAGTCCTCGCAACCGCAGGTGACACCCATCTTGGTGGTGAGGACTTCGA 83463 Query 349888 T 349888 | Sbjct 83462 T 83462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515250187119251