Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq123 149 7e-31 seq85 114 1e-20 >seq123 Length=109856 Score = 149 bits (164), Expect = 7e-31 Identities = 475/729 (65%), Gaps = 6/729 (1%) Strand=Plus/Plus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||| ||| | | ||| ||| ||| || || ||||| |||| ||||| ||||| Sbjct 47511 TGAGACATACAATCTCATGTCCCAGAAGATGTTCACACACGCTTCGCCCACCCTCTTCAA 47570 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 || || || | |||| ||||| || ||| || | | |||||||| ||||| Sbjct 47571 TGCAGGCACACCAAATGCTCAAATGTCATCATGTTTCTTGATCGACATGAAGGAGGACTC 47630 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 |||||| || |||||||| ||||| ||| || ||| ||||| ||| | || || Sbjct 47631 GATCGAGGGAATCTACGATACGCTAAAGACCTGCGCCATGATCTCAAAGAATGCCGGCGG 47690 Query 53422 TATCGGTATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG 53481 ||| || | || | || | || |||| ||| | ||| || || ||||| Sbjct 47691 TATTGGATTGAACGTCCACAAAATTCGAGCGACTGGCTCCTATATCGCAGGCACAAACGG 47750 Query 53482 CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAA 53541 | | | || | || ||||||||||| ||||| |||| || || || |||||| | Sbjct 47751 CACATCAAACGGCCTTGTCCCTATGCTCCGAGTCTTTGACAATACTGCTCGATACGTCGA 47810 Query 53542 CCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGA 53601 |||||| || ||| | || | || ||| | ||||| ||||| ||||||||||| Sbjct 47811 CCAGGGCGGCAACAAGAGACCTGGTGCCTTTGCCGTTTACCTTGAGCCCTGGCACGCCGA 47870 Query 53602 CATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTG 53660 | | |||| || | || || ||| || || | ||||| | || ||| |||| Sbjct 47871 TGTCTTTGAGTGGCTGAACCTCCGGAAGAACCACGGAAAGGAAGAAGTTCG-TGCTCGTG 47929 Query 53661 ACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGG 53720 | ||||| ||||| |||| ||| || || |||||| | ||| ||||| ||| | Sbjct 47930 ATTTGTTTTACGCTCTCTGGACTCCAGATCTGTTCATGAAGCGGGTTGAGAAAAACGGAG 47989 Query 53721 AGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAG 53779 | ||| || | ||||| ||||| || || | | | || ||||||||||||| Sbjct 47990 ACTGGACTCTCTTCTGCCCCAACGAAGCTCCAGGTTTATCTGACTG-CTACGGTGAGGAG 48048 Query 53780 TTTAACGAGATGTATCG-GACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGC 53838 || | | ||| ||| || ||| | | ||||| | ||| ||||||| Sbjct 48049 TTCGAGGCTCTGT-TCGAGAAGTATGAGAAGGAAGGCCGAGGCCGACAGACAATCAAGGC 48107 Query 53839 GCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTG 53898 | || | ||| |||| ||| | || |||| ||||| |||| || | |||| Sbjct 48108 ACAGAAGTTGTGGTATGCCATCTTGGAGGCCCAGACTGAGACTGGAAACCCATTCATGCT 48167 Query 53899 CTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAG 53958 ||||||||| | |||| || || || ||||||||| | ||| |||||| || Sbjct 48168 CTACAAGGACGCCTGCAACAGAAAAAGTAATCAGAAGAACTTGGGCACCATCAAGTCCTC 48227 Query 53959 CAACTTATG 53967 |||||| || Sbjct 48228 CAACTTGTG 48236 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 55744 GACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTA 55803 ||| || |||||||| | |||| | | | || | ||| |||||||| ||||| | Sbjct 48996 GACTGTCTGGGAGATCTCTCAGAGAACTATCATCCAGATGGCCGCTGATCGAGGTGCCTT 49055 Query 55804 CATCGACCAGTCCCAGTCTCTGAACAT-CTTCATGGAGAATCCTTCACTGGCCAAGTTGA 55862 ||| || ||||| ||||| ||||||| | || || || | || | ||| |||| | | Sbjct 49056 CATTGATCAGTCACAGTCGTTGAACATTCATC-TGAAGGAACCAACCATGGGCAAGATCA 49114 Query 55863 GCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGA 55922 || |||||||| || ||||| | ||| |||||||| || ||||||||||| || | Sbjct 49115 CTTCTATGCACTTCGCTGGCTGGAAAATGGGTCTCAAGACTGGCATGTACTATCTTCGAA 49174 Query 55923 CC 55924 || Sbjct 49175 CC 49176 >seq85 Length=245923 Score = 114 bits (126), Expect = 1e-20 Identities = 479/739 (65%), Gaps = 43/739 (6%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || ||||| || ||||| || || || |||||||| || | | |||||||||||||| Sbjct 84157 TAGTCACCCACTCGCTTCTCGAAGAAATTGGTCTTGCCCGCTAGAGAGATGTTCTCCATA 84216 Query 74523 CAGTCGAAAGGGTT-----CTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTGCCATGA 74577 |||| || || || | ||| | ||| | || || |||| ||| | ||| | Sbjct 84217 AAGTCAAACGGATTGGTGACCTTGTA--GTACTTCGGGTTA--CCCATACT-TACCAACA 84271 Query 74578 GGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTT 74637 | || || || || || | |||||||||| |||| || | |||||| | || Sbjct 84272 GCCGGTCGGCAACGAACTCAATGTACTGCTTCATGAGCTTCGAGTTCATGCCCAGTAGA- 84330 Query 74638 TGCAC--GGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAAT 74695 ||| || || |||||||||| || || ||| | || | ||| | ||| || Sbjct 84331 -GCAACGGGGAGCGCCTCGGTGAGGAATTCTTGCTCGATCTGGACGGCC---TCGACGAT 84386 Query 74696 CTTG---TGAATG---TCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCA 74748 || || || || || || |||| | | | ||||| ||| ||| | || Sbjct 84387 GATGGCCTGGATAAGTTCCTTTGAGGGGCGGTGGT---TAAGGTGCGAGAGCAGCAGGCA 84443 Query 74749 CGGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGC 74808 || |||| || ||| ||| || || | | || | ||| || || || | ||||| Sbjct 84444 CG-CAAAGTCGGTGTGCATGCCCTCGTCCCGGGAGATAAGTTCGTTGGAGAAGGTAAGGC 84502 Query 74809 CAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGA 74868 | ||||| || || |||||||| | ||| ||||||| |||||| || |||||||| Sbjct 84503 CGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGA 84562 Query 74869 TGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTG-------CATCGGAA 74921 | ||||| ||| ||||||||||| || || || || || |||| ||| ||| Sbjct 84563 TACCTTCCACAGCGGCAAAGGCGACCAGACGCTGGGC-AAAGGTGGACTCTCGATCTGAA 84621 Query 74922 GTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGC-AGGGACAGTATCGATCGC 74980 ||||| ||||||||||||| |||| || | || ||| | |||||||| || Sbjct 84622 ---ATCCAGCGGAGAGCCCATTCAGC-TTTCTTTCTAATGCAAGGAATTGTATCGATGGC 84677 Query 74981 TTGGAAGAGG-CTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGT 75039 | ||||||| ||| ||| ||| || || || | | ||||||| | |||||||| Sbjct 84678 GTCGAAGAGGTATTGTCTTTGCTT-TGGCTCTTTAATGTATGTGTCAATGAGAAGTGAGT 84736 Query 75040 ACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTG 75099 || | || || || || | | |||| | | || || | || || || | Sbjct 84737 ACATTTCGCTGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAGCAGCGGGCTTCGG 84796 Query 75100 CAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGG 75159 | || || || || || | | | | ||||| |||||||||||||||||| Sbjct 84797 GGACTTGGACTTCGCCGGAGAAGCGCTCGACAAGGTTCTCGTTGACGATGCCGTCCGAGG 84856 Query 75160 CGGCGAAAAAAGCCAGTAC 75178 ||||||| ||||| || || Sbjct 84857 CGGCGAAGAAAGCGAGGAC 84875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214515676600