Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq123 149 7e-31
seq85 114 1e-20
>seq123
Length=109856
Score = 149 bits (164), Expect = 7e-31
Identities = 475/729 (65%), Gaps = 6/729 (1%)
Strand=Plus/Plus
Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301
|||||| ||| | | ||| ||| ||| || || ||||| |||| ||||| |||||
Sbjct 47511 TGAGACATACAATCTCATGTCCCAGAAGATGTTCACACACGCTTCGCCCACCCTCTTCAA 47570
Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361
|| || || | |||| ||||| || ||| || | | |||||||| |||||
Sbjct 47571 TGCAGGCACACCAAATGCTCAAATGTCATCATGTTTCTTGATCGACATGAAGGAGGACTC 47630
Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421
|||||| || |||||||| ||||| ||| || ||| ||||| ||| | || ||
Sbjct 47631 GATCGAGGGAATCTACGATACGCTAAAGACCTGCGCCATGATCTCAAAGAATGCCGGCGG 47690
Query 53422 TATCGGTATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG 53481
||| || | || | || | || |||| ||| | ||| || || |||||
Sbjct 47691 TATTGGATTGAACGTCCACAAAATTCGAGCGACTGGCTCCTATATCGCAGGCACAAACGG 47750
Query 53482 CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAA 53541
| | | || | || ||||||||||| ||||| |||| || || || |||||| |
Sbjct 47751 CACATCAAACGGCCTTGTCCCTATGCTCCGAGTCTTTGACAATACTGCTCGATACGTCGA 47810
Query 53542 CCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGA 53601
|||||| || ||| | || | || ||| | ||||| ||||| |||||||||||
Sbjct 47811 CCAGGGCGGCAACAAGAGACCTGGTGCCTTTGCCGTTTACCTTGAGCCCTGGCACGCCGA 47870
Query 53602 CATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTG 53660
| | |||| || | || || ||| || || | ||||| | || ||| ||||
Sbjct 47871 TGTCTTTGAGTGGCTGAACCTCCGGAAGAACCACGGAAAGGAAGAAGTTCG-TGCTCGTG 47929
Query 53661 ACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGG 53720
| ||||| ||||| |||| ||| || || |||||| | ||| ||||| ||| |
Sbjct 47930 ATTTGTTTTACGCTCTCTGGACTCCAGATCTGTTCATGAAGCGGGTTGAGAAAAACGGAG 47989
Query 53721 AGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAG 53779
| ||| || | ||||| ||||| || || | | | || |||||||||||||
Sbjct 47990 ACTGGACTCTCTTCTGCCCCAACGAAGCTCCAGGTTTATCTGACTG-CTACGGTGAGGAG 48048
Query 53780 TTTAACGAGATGTATCG-GACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGC 53838
|| | | ||| ||| || ||| | | ||||| | ||| |||||||
Sbjct 48049 TTCGAGGCTCTGT-TCGAGAAGTATGAGAAGGAAGGCCGAGGCCGACAGACAATCAAGGC 48107
Query 53839 GCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTG 53898
| || | ||| |||| ||| | || |||| ||||| |||| || | ||||
Sbjct 48108 ACAGAAGTTGTGGTATGCCATCTTGGAGGCCCAGACTGAGACTGGAAACCCATTCATGCT 48167
Query 53899 CTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAG 53958
||||||||| | |||| || || || ||||||||| | ||| |||||| ||
Sbjct 48168 CTACAAGGACGCCTGCAACAGAAAAAGTAATCAGAAGAACTTGGGCACCATCAAGTCCTC 48227
Query 53959 CAACTTATG 53967
|||||| ||
Sbjct 48228 CAACTTGTG 48236
Score = 87.8 bits (96), Expect = 2e-12
Identities = 130/182 (71%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 55744 GACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTA 55803
||| || |||||||| | |||| | | | || | ||| |||||||| ||||| |
Sbjct 48996 GACTGTCTGGGAGATCTCTCAGAGAACTATCATCCAGATGGCCGCTGATCGAGGTGCCTT 49055
Query 55804 CATCGACCAGTCCCAGTCTCTGAACAT-CTTCATGGAGAATCCTTCACTGGCCAAGTTGA 55862
||| || ||||| ||||| ||||||| | || || || | || | ||| |||| | |
Sbjct 49056 CATTGATCAGTCACAGTCGTTGAACATTCATC-TGAAGGAACCAACCATGGGCAAGATCA 49114
Query 55863 GCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGA 55922
|| |||||||| || ||||| | ||| |||||||| || ||||||||||| || |
Sbjct 49115 CTTCTATGCACTTCGCTGGCTGGAAAATGGGTCTCAAGACTGGCATGTACTATCTTCGAA 49174
Query 55923 CC 55924
||
Sbjct 49175 CC 49176
>seq85
Length=245923
Score = 114 bits (126), Expect = 1e-20
Identities = 479/739 (65%), Gaps = 43/739 (6%)
Strand=Plus/Plus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|| ||||| || ||||| || || || |||||||| || | | ||||||||||||||
Sbjct 84157 TAGTCACCCACTCGCTTCTCGAAGAAATTGGTCTTGCCCGCTAGAGAGATGTTCTCCATA 84216
Query 74523 CAGTCGAAAGGGTT-----CTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTGCCATGA 74577
|||| || || || | ||| | ||| | || || |||| ||| | ||| |
Sbjct 84217 AAGTCAAACGGATTGGTGACCTTGTA--GTACTTCGGGTTA--CCCATACT-TACCAACA 84271
Query 74578 GGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTT 74637
| || || || || || | |||||||||| |||| || | |||||| | ||
Sbjct 84272 GCCGGTCGGCAACGAACTCAATGTACTGCTTCATGAGCTTCGAGTTCATGCCCAGTAGA- 84330
Query 74638 TGCAC--GGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAAT 74695
||| || || |||||||||| || || ||| | || | ||| | ||| ||
Sbjct 84331 -GCAACGGGGAGCGCCTCGGTGAGGAATTCTTGCTCGATCTGGACGGCC---TCGACGAT 84386
Query 74696 CTTG---TGAATG---TCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCA 74748
|| || || || || || |||| | | | ||||| ||| ||| | ||
Sbjct 84387 GATGGCCTGGATAAGTTCCTTTGAGGGGCGGTGGT---TAAGGTGCGAGAGCAGCAGGCA 84443
Query 74749 CGGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGC 74808
|| |||| || ||| ||| || || | | || | ||| || || || | |||||
Sbjct 84444 CG-CAAAGTCGGTGTGCATGCCCTCGTCCCGGGAGATAAGTTCGTTGGAGAAGGTAAGGC 84502
Query 74809 CAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGA 74868
| ||||| || || |||||||| | ||| ||||||| |||||| || ||||||||
Sbjct 84503 CGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGA 84562
Query 74869 TGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTG-------CATCGGAA 74921
| ||||| ||| ||||||||||| || || || || || |||| ||| |||
Sbjct 84563 TACCTTCCACAGCGGCAAAGGCGACCAGACGCTGGGC-AAAGGTGGACTCTCGATCTGAA 84621
Query 74922 GTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGC-AGGGACAGTATCGATCGC 74980
||||| ||||||||||||| |||| || | || ||| | |||||||| ||
Sbjct 84622 ---ATCCAGCGGAGAGCCCATTCAGC-TTTCTTTCTAATGCAAGGAATTGTATCGATGGC 84677
Query 74981 TTGGAAGAGG-CTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGT 75039
| ||||||| ||| ||| ||| || || || | | ||||||| | ||||||||
Sbjct 84678 GTCGAAGAGGTATTGTCTTTGCTT-TGGCTCTTTAATGTATGTGTCAATGAGAAGTGAGT 84736
Query 75040 ACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTG 75099
|| | || || || || | | |||| | | || || | || || || |
Sbjct 84737 ACATTTCGCTGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAGCAGCGGGCTTCGG 84796
Query 75100 CAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGG 75159
| || || || || || | | | | ||||| ||||||||||||||||||
Sbjct 84797 GGACTTGGACTTCGCCGGAGAAGCGCTCGACAAGGTTCTCGTTGACGATGCCGTCCGAGG 84856
Query 75160 CGGCGAAAAAAGCCAGTAC 75178
||||||| ||||| || ||
Sbjct 84857 CGGCGAAGAAAGCGAGGAC 84875
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547214515676600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |