Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq154 167 3e-36 seq123 150 2e-31 seq85 120 3e-22 seq43 102 9e-17 seq102 98.7 1e-15 >seq154 Length=71981 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| | || || ||||| || ||||| ||||||||||| Sbjct 41018 ATGCAGATTTTTGTGAAGACATTGACTGGTAAGACAATCACTCTCGAGGTTGAGTCTTCC 41077 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | ||| ||||| ||||| |||||||| |||||||| |||||| Sbjct 41078 GATACCATCGACAATGTCAAGAGCAAAATCCAGGATAAGGAGGGTATTCCTCCCGACCAG 41137 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||||||||||||||| || || | || || | || || ||| Sbjct 41138 CAGCGACTCATCTTTGCTGGTAAGCAACTGGAAGACGGCCGAACTTTGAGTGATTACAAT 41197 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| |||||||| ||||| | || ||||| ||||| Sbjct 41198 ATCCAGAAGGAATCGACTCTTCACCTAGTTCTACGACTTCGTGGTGG 41244 Score = 149 bits (164), Expect = 7e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| || || |||||||| || || |||||||| || || | Sbjct 40789 AATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAATCCAG 40848 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | ||| | ||| || ||||| ||||||||||| |||||||| ||||| Sbjct 40849 TGACACGATCGACAATGTCAAGAGCAAGATTCAAGACAAGGAGGGCATTCCTCCTGACCA 40908 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATA 27583 ||| ||||| ||||| ||||||||||| || || || | ||| ||| | ||| ||||| | Sbjct 40909 GCAACGTCTGATTTTCGCTGGTAAGCAGCTTGAAGACGGTCGCACCTTGAGC-GACTACA 40967 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || || ||||| || || || | || | ||||| || || || Sbjct 40968 ACATTCAGAAAGAATCAACCCTCCACTTGGTGCTCCGTCTCCGTGGCGG 41016 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| |||||||| || || || ||||| || || || || || || || ||| | Sbjct 41246 ATGCAAATTTTTGTCAAAACTCTCACAGGCAAAACCATAACACTCGAAGTGGAATCATCT 41305 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||| | ||||| || |||||||| || ||||| ||||||||| Sbjct 41306 GATACCATCGATAACGTTAAGTCGAAAATCCAAGACAAGGAAGGTATTCCACCAGACCAG 41365 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || || || || ||||||| ||| ||| | |||| || || Sbjct 41366 CAGCGGTTGATCTTCGCAGGCAAACAGCTGGAGGATGGTCGAACCTTGTCAGATTACAAC 41425 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || || || || || || || | | || ||||| Sbjct 41426 ATTCAGAAAGAGTCTACACTGCACCTTGTGCTGAGATTGCGAGGTGG 41472 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| || ||||||||||| ||||| | ||||||||| | Sbjct 41474 ATGCAAATTTTCGTGAAGACACTCACCGGCAAGACAATTACCTTGGAGGTTGAGAGCTCT 41533 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||| | || || |||||||||||||| ||||| || || ||| Sbjct 41534 GACACTATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATTCCGCCGGATCAG 41593 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || || || ||||| || |||||| | ||||| | |||||| || | || || || Sbjct 41594 CAACGACTGATCTTTGCCGGAAAGCAATTGGAGGACGGTCGTACTCTTTCTGATTACAAC 41653 Query 27586 GTCCAAAAGGA 27596 | || ||||| Sbjct 41654 ATTCAGAAGGA 41664 >seq123 Length=109856 Score = 150 bits (166), Expect = 2e-31 Identities = 550/852 (65%), Gaps = 17/852 (2%) Strand=Plus/Minus Query 80908 GACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCAC 80967 || |||| |||||| ||||| ||||| |||| | || |||| | |||||| |||||| Sbjct 48293 GAAGCCAAATTGCAGACGGCGACCTCGTCAGGGGCGGTGTACTCAATGATTTCTGTGCAC 48234 Query 80968 AAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCC 81027 || || || ||||| || || |||| ||| ||||| || || |||||| |||||| Sbjct 48233 AAGTTGGAGGACTTGATGGTGCCCAAGTTCTTCTGATTACTTTTTCTGTTGCAGGCGTCC 48174 Query 81028 TTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATC 81087 |||||| |||| | ||| | || ||||| ||| | || | |||||| | ||| | | Sbjct 48173 TTGTAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTCCAAGATGGCATACCACAAC 48114 Query 81088 TCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTCG 81147 | | ||||||| || ||| | |||||| | ||||||| || | | Sbjct 48113 TTCTGTGCCTTGATTGTCTGTCGGCCTCGGCCTTCCTTCTCATACTTCTCGAACAGAGCC 48054 Query 81148 TCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTG 81206 ||||||| |||||| | || |||| | |||| ||||| ||||| | || Sbjct 48053 TCGAACTCCTCACCGTAGCAG-TCAGATAAACCTGGAGCTTCGTTGGGGCAGAAGAGAGT 47995 Query 81207 CCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAA 81266 |||||| || ||||| || ||||||||| || || ||||||| ||| || Sbjct 47994 CCAGTCTCCGTTTTTCTCAACCCGCTTCATGAACAGATCTGGAGTCCAGAGAGCGTAAAA 47935 Query 81267 CAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCA 81325 || || || ||| || | || || | || ||||| || | | || | || | Sbjct 47934 CAAATCACGAGCA-CGAACTTCTTCCTTTCCGTGGTTCTTCCGGAGGTTCAGCCACTCAA 47876 Query 81326 TGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGCGACGGC 81379 || || || ||||| ||||| || || ||||| | | || | |||| || Sbjct 47875 AGACATCGGCGTGCCAGGGCTCAAGGTAAACGGCAAAGGCACCAGGTCTCTTG---TTGC 47819 Query 81380 CACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCAT 81439 | ||||||| |||||| || ||||| || ||| || || | |||||||| | || | Sbjct 47818 CGCCCTGGTCGACGTATCGAGCAGTATTGTCAAAGACTCGGAGCATAGGGACAAGGCCGT 47759 Query 81440 CTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGA--TTGA 81497 ||| ||||| || || ||||| || || | || || | ||| || || | Sbjct 47758 TTGATGTGCCGTTTGTGCCTGCGATATAGGAGCCAGTCGCTCGAATTTTGTGGACGTTCA 47699 Query 81498 AAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAAT 81557 | || || || || | |||||| ||| || || || | || || || || Sbjct 47698 A--TCCAATACCGCCGGCATTCTTTGAGATCATGGCGCAGGTCTTTAGCGTATCGTAGAT 47641 Query 81558 TCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTT 81617 ||||||||| || | |||||||| | ||||||||| |||||| |||| || Sbjct 47640 TCCCTCGATCGAGTCCTCCTTCATGTCGATCAAGAAACATGATGACATTTGAGCATTTGG 47581 Query 81618 TGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTC 81677 || ||| |||||||| || || || | ||||| |||| | ||||| || | Sbjct 47580 TGTGCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGTGAACATCTTCTGGGACATGAGATT 47521 Query 81678 ATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAA 81737 || || || |||| ||||| || || ||||| || | || || ||||| | Sbjct 47520 GTATGTCTCAATGACCTTCTCGATATCTTCTCCATGAATGCCAACAGACACGCGCATCAG 47461 Query 81738 CATGTACTGGGG 81749 ||||| ||| || Sbjct 47460 CATGTGCTGTGG 47449 Score = 91.5 bits (100), Expect = 2e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || |||||||||||||| |||||||| ||| | |||||||| | |||||||||| Sbjct 49175 GTTCGAAGATAGTACATGCCAGTCTTGAGACCCATTTTCCAGCCAGCGAAGTGCATAGAA 49116 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAG-ATGTTCAGAGACTGAGACTGACAGAT 80156 ||| ||| | | || || | || || || | ||||||| ||||| |||||| || Sbjct 49115 GTGATCTTGCCCATGGTTGGTTCCTTCA-GATGAATGTTCAACGACTGTGACTGATCAAT 49057 Query 80157 GAAAGCCCCACGATCTGCCGCCAT 80180 ||| || || ||||| || ||||| Sbjct 49056 GAAGGCACCTCGATCAGCGGCCAT 49033 >seq85 Length=245923 Score = 120 bits (132), Expect = 3e-22 Identities = 151/207 (73%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGATGA---ATCGTGGGTCGTCGTTTGGTCAGCGT 64719 || || ||||||||||| |||| ||||| |||| | ||| | |||| |||||| Sbjct 84650 AAGAAAGCTGAATGGGCTCTCCGCTGGATTTCAGATCGAGAGTCCACCTTTGCCCAGCGT 84591 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 || | || |||||| ||||||||| || ||||| || || || ||| || || ||| Sbjct 84590 CTGGTCGCCTTTGCCGCTGTGGAAGGTATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTC 84531 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||||| || ||||| || || ||||| || || | || || ||||| || ||||| ||| Sbjct 84530 TGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTTACCTTCTCCAACGAACTTATCTCCCGG 84471 Query 64840 GACGAGGGGCTCCACCAAGAATTTGCG 64866 |||||||| | ||| || |||||| Sbjct 84470 GACGAGGGCATGCACACCGACTTTGCG 84444 >seq43 Length=153456 Score = 102 bits (112), Expect = 9e-17 Identities = 105/135 (78%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| ||||| || || |||||||| | || || || || |||||||||||| Sbjct 109394 GACAAGGAGGGTATTCCACCTGATCAGCAGCGATTGATCTTCGCCGGCAAGCAACTCGAG 109453 Query 27559 GATGATCGTACCC-TAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 |||| ||| |||| |||| ||||| || |||| ||||| || ||||| || || || | Sbjct 109454 GATGGTCGCACCCTTAGC-GACTACAACATCCAGAAGGAGTCGACTCTACACCTGGTACT 109512 Query 27618 GCGTCTTCGCGGTGG 27632 || ||||| || || Sbjct 109513 ACGACTTCGAGGCGG 109527 >seq102 Length=189570 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| || ||||| || || |||||||| || || |||||||| ||||| || | || Sbjct 7641 CTTCGTAAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCAGACACAAT 7700 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| | ||| || || |||| ||||||||| || || ||||||||||| || | Sbjct 7701 CGACAATGTCAAGAGCAAGATCCAGGTCAAGGAGGGTATCCCGCCAGACCAGCAACGATT 7760 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 ||||| || || ||||| || || |||| || || || | ||||| || | ||||| Sbjct 7761 GATTTTCGCGGGAAAGCAGCTGGAAGATGGCCGAACTCTCTCTGACTACAACATTCAAAA 7820 Query 27594 GG 27595 || Sbjct 7821 GG 7822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308853033040