Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq119 84.2 2e-11 >seq119 Length=145552 Score = 84.2 bits (92), Expect = 2e-11 Identities = 226/342 (66%), Gaps = 8/342 (2%) Strand=Plus/Plus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 || || || |||||||| || || | | || | || | | ||| || | ||||| Sbjct 117907 CCCCTCCTTACGACGAAGCGCGTCTTCACAAAAGCTGTAATTGCGGAATTGTTATGGTTT 117966 Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342 | | ||| | ||||||| ||||||||| | ||| || | || ||||||| Sbjct 117967 CTCAAGGGTTCGACGAACAGCAAGGAGCTGAGTGAGCAGGGTGTCCACATTTGGGACGGA 118026 Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCA-----TCT-CGGGAGGAGGGC 34396 | || ||| || ||||| || || | ||| |||| ||| || || |||||| Sbjct 118027 AATGGCAGTCGTGAGTTTCTCGATAAACTCGGGCCCCCACAGAGTCTGCGCGAAGAGGGC 118086 Query 34397 GACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAG- 34455 |||||||| || || ||||| ||||| ||| | || |||||||| |||||| | | Sbjct 118087 GACTTGGGTCCCGTGTACGGTTTCCAATGGCGGCATTTTGGGGCAGAGTATAAAGACTGT 118146 Query 34456 CGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAA 34515 || | | || ||| |||| || || | |||||| | | | | ||| ||| |||| Sbjct 118147 CGTA-CAGATTATACGGGCCAAGGTGTCGACCAGATAAAAGAGATCATCCACAAGTTGAG 118205 Query 34516 GCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAA 34557 || || ||| ||||| | |||||| | || | || ||||| Sbjct 118206 GCATAAGCCTTATGACCGGAGGATCCTTCTGAGTGCATGGAA 118247 Score = 84.2 bits (92), Expect = 2e-11 Identities = 226/342 (66%), Gaps = 8/342 (2%) Strand=Plus/Minus Query 6788 TTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACG 6847 ||||| || | || | |||||| | ||||| ||| || || |||| ||| ||| | Sbjct 118247 TTCCATGCACTCAGAAGGATCCTCCGGTCATAAGGCTTATGCCTCAACTTGTGGATGATC 118188 Query 6848 TACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCG-CTCCCCCGATACTCCGC 6906 | | | |||||| | || || |||| ||| || | | || | | |||||| || Sbjct 118187 TCTTTTATCTGGTCGACACCTTGGCCCGTATAATCTG-TACGACAGTCTTTATACTCTGC 118129 Query 6907 CCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCG-AGA-- 6963 |||||| || | ||| ||||| ||||| || || |||||||||||||| || || ||| Sbjct 118128 CCCAAAATGCCGCCATTGGAAACCGTACACGGGACCCAAGTCGCCCTCTTCGCGCAGACT 118069 Query 6964 ---TGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCAC 7020 |||| ||| | || || ||||| || ||| || | ||||||| || | || Sbjct 118068 CTGTGGGGGCCCGAGTTTATCGAGAAACTCACGACTGCCATTTCCGTCCCAAATGTGGAC 118009 Query 7021 CCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTC 7080 ||| | ||||||||| ||||||| | ||| | | ||||| | || ||| | Sbjct 118008 ACCCTGCTCACTCAGCTCCTTGCTGTTCGTCGAACCCTTGAGAAACCATAACAATTCCGC 117949 Query 7081 GACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGG 7122 | || | || | | || || |||||||| || || || Sbjct 117948 AATTACAGCTTTTGTGAAGACGCGCTTCGTCGTAAGGAGGGG 117907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448261184088240