Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq154 104 2e-17 >seq154 Length=71981 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| ||||| || || || || || ||||| | || || || ||| | Sbjct 41474 ATGCAAATTTTCGTGAAGACACTCACCGGCAAGACAATTACCTTGGAGGTTGAGAGCTCT 41533 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| || || || || ||||| || ||| ||||| ||| | Sbjct 41534 GACACTATCGACAAT--GTAAAGTCCAAGATCCAGGACAAGGAGGGTATTCCGCCGGATC 41591 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| | || ||||||||||| |||||||| |||| || | | || ||||||| Sbjct 41592 AGCAACGACTGATCTTTGCCGGAAAGCAATTGGAGGACGGTCGTACTCTTTCTGATTACA 41651 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||| || || ||||| || |||| |||||| | || | || |||||| Sbjct 41652 ACATTCAGAAGGAGAGTACACTGCACTTGGTTCTCCGACTTCGGGGCGGC 41701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355861458855159